Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq19309 122 7e-23 >seq19309 Length=20099 Score = 122 bits (134), Expect = 7e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || ||||||||||| |||||||| || |||||||| ||||| || Sbjct 1340 CCACCACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCC 1281 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || |||||||| || ||| | || | | ||| || || || ||| Sbjct 1280 AGGGTGCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGA 1221 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| ||| || | |||||| | || | || || ||| ||| || Sbjct 1220 ATACCTTCTTTGTCTTG-AATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAAC 1162 Query 29739 TTCAAGAGTTATAGTTTTGCCAGT 29762 || || || || || ||||| || Sbjct 1161 CTCGAGGGTGATGGTCTTGCCGGT 1138 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 ||| ||||| | || |||| ||||| ||||| || || || ||||||||||| ||||| Sbjct 2210 TTGACCTCCACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATC 2151 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 |||| || || || || | |||||| || ||| | || |||| || || || || Sbjct 2150 GGCAAGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGG 2091 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 || ||||| || ||||| || ||| || | ||||||| | || | || || || | Sbjct 2090 TGGGATACCTTCCTTGTCCTG-AATCTTGGCTTTGACATTGTCAATTGTATCCGATGACT 2032 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||||| || || || || || ||||| Sbjct 2031 CGACTTCGAGGGTGATGGTCTTACCAGT 2004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385117044563019