Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq18202 104 2e-16 seq18860 91.5 1e-12 >seq18202 Length=17611 Score = 104 bits (114), Expect = 2e-16 Identities = 195/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || ||||| || || ||||||||||| ||||| | ||| | || | || ||| | || Sbjct 15820 ACGAGACGGTTGTCGAAATCTTCACCACCCAAGTGAGTGTCACCAGCAGTGGCTTTGACC 15761 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | || | || || |||| || ||| |||| |||||| || ||||| || | ||| Sbjct 15760 TCAAAGATACCCTCCTCAATAGTCAAGAGAGAGACATCAAAAGTACCACCTCCAAGATCG 15701 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || ||||| || | || || |||||||| || || | || ||| Sbjct 15700 AAGATGAGCACATTGCGCTCACCAACGGTCTTCTTGTCAAGACCGTAGGCGATGGCGGCA 15641 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || ||||| || ||||| | | || || ||||||| || || ||||| || Sbjct 15640 GCGGTAGGTTCGTTGATAATACGAAGAATGTTGAGACCAGAGATCAAACCAGCATCCTTG 15581 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAAC 282468 |||||||||| || || || || || |||||||| || || | ||| Sbjct 15580 GTGGCTTGTCGCTGAGAGTCATTGAAGTATGCAGGGACGGTGACAAC 15534 Score = 100 bits (110), Expect = 2e-15 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 |||||| | || || || || |||| || ||| ||| || | ||| |||||| || Sbjct 15183 ACCAATGAGACGCTTGGCGTCGAAAACGGTGTTGTGTGGGTTCATTGCCACTTGATTCTT 15124 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 ||| || || || |||| |||| | || || || | || || || || || || || Sbjct 15123 GGCGGCGTCACCGATCAATCGTTCAGAGTCAGTGAAAGCGACGTAAGAAGGGGTGGTTCG 15064 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 || |||||||| || ||||| |||||||| | |||| ||||||||||| |||||| Sbjct 15063 GTTTCCTTGATCGTTGGCAATGATTTCAACACGATCATTCTGCCATACACCGACACAAGA 15004 Query 282850 AAAAGTTGTTCCTAAATCAATACCAATAGC 282879 | || ||||| | ||| ||||| | ||| Sbjct 15003 GTAGGTAGTTCCGAGATCGATACCGACAGC 14974 >seq18860 Length=11993 Score = 91.5 bits (100), Expect = 1e-12 Identities = 194/281 (69%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 400262 ATGCTCACAAAGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTGACAGAGGGAG 400321 |||| | || ||||| ||||| ||| | | ||||| || || || || || |||| Sbjct 10792 ATGCCAATAACGCAGGGACCAAGAAAGCAGCAGATTGTACTCTCATCTTAACGGAAGGAG 10733 Query 400322 ATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATTGGAAGAGATTATTATGGAG 400381 ||||||| ||| | || ||| | |||| | || || ||| | ||| ||||||| | Sbjct 10732 ATTCAGCCAAATCCTTGGCTGTTGCTGGATTATCGGTCATCGGACGTGATAATTATGGTG 10673 Query 400382 TTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaaaaaaTTG-CC 400440 ||||||||||| | |||||||| | || ||| | || || ||| || ||||| Sbjct 10672 TTTTCCCACTTCGTGGAAAACTACTAAACGTTCGAGAAGCCAGT-GGAAGTCAATTGTTA 10614 Query 400441 GATAATGAGGAAATTACAGCA-ATCaaaaaaaTTGTTGGACTTGAACAAGGAAAAGTTTA 400499 | |||| || | | || || ||||| |||||| | |||||| ||||||| ||| || Sbjct 10613 GCGAATGCTGAGA-TCCAACACATCAAGAAAATTATGGGACTTCAACAAGGCAAAAAATA 10555 Query 400500 TGATGATCTCAAAGGT--TTACGATATGGTAGTATTATGAT 400538 | | | || | || ||||||||||| ||| | ||||| Sbjct 10554 T-ACCA-GTCGAGAGTCCTTACGATATGGAAGTTTGATGAT 10516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739562125053534