Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq18202 104 2e-16
seq18860 91.5 1e-12
>seq18202
Length=17611
Score = 104 bits (114), Expect = 2e-16
Identities = 195/287 (68%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241
|| ||||| || || ||||||||||| ||||| | ||| | || | || ||| | ||
Sbjct 15820 ACGAGACGGTTGTCGAAATCTTCACCACCCAAGTGAGTGTCACCAGCAGTGGCTTTGACC 15761
Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301
| || | || || |||| || ||| |||| |||||| || ||||| || | |||
Sbjct 15760 TCAAAGATACCCTCCTCAATAGTCAAGAGAGAGACATCAAAAGTACCACCTCCAAGATCG 15701
Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361
|| || || ||||| || | || || |||||||| || || | || |||
Sbjct 15700 AAGATGAGCACATTGCGCTCACCAACGGTCTTCTTGTCAAGACCGTAGGCGATGGCGGCA 15641
Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421
|| || ||||| || ||||| | | || || ||||||| || || ||||| ||
Sbjct 15640 GCGGTAGGTTCGTTGATAATACGAAGAATGTTGAGACCAGAGATCAAACCAGCATCCTTG 15581
Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAAC 282468
|||||||||| || || || || || |||||||| || || | |||
Sbjct 15580 GTGGCTTGTCGCTGAGAGTCATTGAAGTATGCAGGGACGGTGACAAC 15534
Score = 100 bits (110), Expect = 2e-15
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729
|||||| | || || || || |||| || ||| ||| || | ||| |||||| ||
Sbjct 15183 ACCAATGAGACGCTTGGCGTCGAAAACGGTGTTGTGTGGGTTCATTGCCACTTGATTCTT 15124
Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789
||| || || || |||| |||| | || || || | || || || || || || ||
Sbjct 15123 GGCGGCGTCACCGATCAATCGTTCAGAGTCAGTGAAAGCGACGTAAGAAGGGGTGGTTCG 15064
Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849
|| |||||||| || ||||| |||||||| | |||| ||||||||||| ||||||
Sbjct 15063 GTTTCCTTGATCGTTGGCAATGATTTCAACACGATCATTCTGCCATACACCGACACAAGA 15004
Query 282850 AAAAGTTGTTCCTAAATCAATACCAATAGC 282879
| || ||||| | ||| ||||| | |||
Sbjct 15003 GTAGGTAGTTCCGAGATCGATACCGACAGC 14974
>seq18860
Length=11993
Score = 91.5 bits (100), Expect = 1e-12
Identities = 194/281 (69%), Gaps = 8/281 (3%)
Strand=Plus/Minus
Query 400262 ATGCTCACAAAGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTGACAGAGGGAG 400321
|||| | || ||||| ||||| ||| | | ||||| || || || || || ||||
Sbjct 10792 ATGCCAATAACGCAGGGACCAAGAAAGCAGCAGATTGTACTCTCATCTTAACGGAAGGAG 10733
Query 400322 ATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATTGGAAGAGATTATTATGGAG 400381
||||||| ||| | || ||| | |||| | || || ||| | ||| ||||||| |
Sbjct 10732 ATTCAGCCAAATCCTTGGCTGTTGCTGGATTATCGGTCATCGGACGTGATAATTATGGTG 10673
Query 400382 TTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaaaaaaTTG-CC 400440
||||||||||| | |||||||| | || ||| | || || ||| || |||||
Sbjct 10672 TTTTCCCACTTCGTGGAAAACTACTAAACGTTCGAGAAGCCAGT-GGAAGTCAATTGTTA 10614
Query 400441 GATAATGAGGAAATTACAGCA-ATCaaaaaaaTTGTTGGACTTGAACAAGGAAAAGTTTA 400499
| |||| || | | || || ||||| |||||| | |||||| ||||||| ||| ||
Sbjct 10613 GCGAATGCTGAGA-TCCAACACATCAAGAAAATTATGGGACTTCAACAAGGCAAAAAATA 10555
Query 400500 TGATGATCTCAAAGGT--TTACGATATGGTAGTATTATGAT 400538
| | | || | || ||||||||||| ||| | |||||
Sbjct 10554 T-ACCA-GTCGAGAGTCCTTACGATATGGAAGTTTGATGAT 10516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739562125053534
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |