Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 159 7e-34
>seq19309
Length=20099
Score = 159 bits (176), Expect = 7e-34
Identities = 160/208 (77%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| ||||| ||||| || || || |||||||| || || || ||||
Sbjct 1634 TACCACCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAG 1575
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||| ||| ||||||||| ||||| ||||| |||||||| || | ||||||||| ||||
Sbjct 1574 CGAGAGTTCGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAG 1515
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| ||||||||||| || || ||||| ||||| || || | ||| |
Sbjct 1514 GGATACCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGA 1455
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAA 82789
|||| | ||| || ||||| || |||||
Sbjct 1454 CTTCGAGAGTGATGGTCTTTCCAGTCAA 1427
Score = 140 bits (154), Expect = 6e-28
Identities = 154/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || ||| || || || || ||||| ||||| ||||| || || ||||| |
Sbjct 1342 TACCACCACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGG 1283
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | || ||||| ||||||||||| |||||||| || | |||||| ||||| |
Sbjct 1282 CCAGGGTGCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTG 1223
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| || ||||||||||| || || ||||| ||||| ||||| || ||| |
Sbjct 1222 GAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAA 1163
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786
| || | || || |||||||| ||
Sbjct 1162 CCTCGAGGGTGATGGTCTTGCCGGT 1138
Score = 116 bits (128), Expect = 7e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | || ||||| ||||| ||||| ||||| ||||||| || | | |||
Sbjct 1907 ACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCGAGTGTGCGACC 1848
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| |||||||| |||||||| || || | |||||||||||| || || ||||||||
Sbjct 1847 ATCTTCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGGGAATGCCTTCCTT 1788
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
|| || || || || || || || || ||||| || | ||| || |||| || ||
Sbjct 1787 GTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCGACCTCCAGCGTAAT 1728
Query 82775 CGTCTTGCCTGT 82786
|| || || ||
Sbjct 1727 TGTTTTACCGGT 1716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981553479156301
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |