Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 105 4e-18
>seq19309
Length=20099
Score = 105 bits (116), Expect = 4e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | |||||||| |||||| || || || |||||||||||||
Sbjct 1341 ACCACCACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGC 1282
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| |||||| | || || | ||||||||||||||| || | ||| || || ||| | ||
Sbjct 1281 CAGGGTGCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGG 1222
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||||||||| ||| || | | |||| ||| | ||| ||| ||||| |
Sbjct 1221 AATACCTTCTTTGTCTTGAATCTT-GGCCTTGACATTGTCAATGGTATCGGAAGATTCAA 1163
Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725
| || | ||||| || || || ||
Sbjct 1162 CCTCGAGGGTGATGGTCTTGCCGGT 1138
Score = 102 bits (112), Expect = 5e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 33532 AAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGT 33591
|| || || ||||| || ||||| ||| ||||| ||||||||||||| ||||| ||
Sbjct 2197 AATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGC 2138
Query 33592 TCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCT 33651
|||| ||||||||||| || ||||| || || ||||| || ||| | || | ||||||
Sbjct 2137 CCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCC 2078
Query 33652 TTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGT 33710
||||| ||| || | || |||| ||| | || || ||| || || || | ||
Sbjct 2077 TTGTCCTGAATCTT-GGCTTTGACATTGTCAATTGTATCCGATGACTCGACTTCGAGGGT 2019
Query 33711 GATCGTTTTACCTGT 33725
||| || ||||| ||
Sbjct 2018 GATGGTCTTACCAGT 2004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328616831705280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |