Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq19309 105 4e-18 >seq19309 Length=20099 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||||| |||||| || || || ||||||||||||| Sbjct 1341 ACCACCACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGC 1282 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || || | ||||||||||||||| || | ||| || || ||| | || Sbjct 1281 CAGGGTGCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGG 1222 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||| || | | |||| ||| | ||| ||| ||||| | Sbjct 1221 AATACCTTCTTTGTCTTGAATCTT-GGCCTTGACATTGTCAATGGTATCGGAAGATTCAA 1163 Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725 | || | ||||| || || || || Sbjct 1162 CCTCGAGGGTGATGGTCTTGCCGGT 1138 Score = 102 bits (112), Expect = 5e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 33532 AAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGT 33591 || || || ||||| || ||||| ||| ||||| ||||||||||||| ||||| || Sbjct 2197 AATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGC 2138 Query 33592 TCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCT 33651 |||| ||||||||||| || ||||| || || ||||| || ||| | || | |||||| Sbjct 2137 CCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCC 2078 Query 33652 TTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGT 33710 ||||| ||| || | || |||| ||| | || || ||| || || || | || Sbjct 2077 TTGTCCTGAATCTT-GGCTTTGACATTGTCAATTGTATCCGATGACTCGACTTCGAGGGT 2019 Query 33711 GATCGTTTTACCTGT 33725 ||| || ||||| || Sbjct 2018 GATGGTCTTACCAGT 2004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328616831705280