Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq19309 104 6e-17 seq12868 84.2 5e-11 >seq19309 Length=20099 Score = 104 bits (114), Expect = 6e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 ||||| || || || ||||| | || || ||| ||| || || | || || ||| Sbjct 1135 CTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAG 1194 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 ||||||||||| |||||||| ||| || ||| ||| | || ||||| |||||| Sbjct 1195 GCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 || || | ||||||||| | || |||||||||||||| | ||||| || || |||||| Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314 Query 206371 CA 206372 || Sbjct 1315 CA 1316 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || |||||| | ||||| ||| || |||||| | || || ||| Sbjct 1430 ACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGCC 1489 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || || || || || || ||| | |||||||| || |||||| Sbjct 1490 AAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAAAG 1549 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||| || | ||| | || || |||||| | ||||||||||| || |||||| Sbjct 1550 CAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTCAC 1609 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | | ||||| Sbjct 1610 TTGGTTCTTCGTCTTCG 1626 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| | |||||| || ||||||||||| | || |||||||| | ||| Sbjct 1626 CGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTT 1567 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | || ||||| || |||||||| || |||||||| ||||||||| Sbjct 1566 CGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGA 1522 >seq12868 Length=7141 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| ||||| |||||||| || |||| || |||||||||||||| | |||||||| Sbjct 5933 ACAAGATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCATCTTCG 5874 Query 204824 AGCTGCTTTCCGGC 204837 |||||||||||||| Sbjct 5873 AGCTGCTTTCCGGC 5860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181491323503039