Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 104 6e-17
seq12868 84.2 5e-11
>seq19309
Length=20099
Score = 104 bits (114), Expect = 6e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250
||||| || || || ||||| | || || ||| ||| || || | || || |||
Sbjct 1135 CTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAG 1194
Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310
||||||||||| |||||||| ||| || ||| ||| | || ||||| ||||||
Sbjct 1195 GCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254
Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370
|| || | ||||||||| | || |||||||||||||| | ||||| || || ||||||
Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314
Query 206371 CA 206372
||
Sbjct 1315 CA 1316
Score = 95.1 bits (104), Expect = 3e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| ||||| || |||||| | ||||| ||| || |||||| | || || |||
Sbjct 1430 ACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGCC 1489
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||||||||| || || || || || || ||| | |||||||| || ||||||
Sbjct 1490 AAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAAAG 1549
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| | ||||| || | ||| | || || |||||| | ||||||||||| || ||||||
Sbjct 1550 CAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTCAC 1609
Query 206374 CTTGTTTTGAGACTTCG 206390
| ||| | | |||||
Sbjct 1610 TTGGTTCTTCGTCTTCG 1626
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||| | | ||| | |||||| || ||||||||||| | || |||||||| | |||
Sbjct 1626 CGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTT 1567
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| || ||||| || |||||||| || |||||||| |||||||||
Sbjct 1566 CGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGA 1522
>seq12868
Length=7141
Score = 84.2 bits (92), Expect = 5e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
||||| ||||| |||||||| || |||| || |||||||||||||| | ||||||||
Sbjct 5933 ACAAGATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCATCTTCG 5874
Query 204824 AGCTGCTTTCCGGC 204837
||||||||||||||
Sbjct 5873 AGCTGCTTTCCGGC 5860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181491323503039
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |