Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 95.1 1e-14
>seq19309
Length=20099
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| || ||||| ||||| || | | ||||| |||||||||||||| ||| | ||
Sbjct 2201 ACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGT 2142
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
||| ||||| | |||||||| | | |||||| |||||||| ||||| || || ||
Sbjct 2141 TCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACC 2082
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
||| || || ||| || ||| | | || | ||||| | | ||| |||||||
Sbjct 2081 TTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATTGTATCCGATGACTCGACTTCGAG 2022
Query 132082 CGTCAGCGTTTTACCAGTCAGA 132103
|| | || ||||||||||||
Sbjct 2021 GGTGATGGTCTTACCAGTCAGA 2000
Score = 84.2 bits (92), Expect = 2e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| || | |||||||| | | || || || ||||||||||| ||| || |||
Sbjct 1335 ACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGT 1276
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| |||||| || ||||| |||| | |||| ||||| ||||| ||||| || || ||
Sbjct 1275 GCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACC 1216
Query 132022 TTCTTTATC 132030
|||||| ||
Sbjct 1215 TTCTTTGTC 1207
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476481567711240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |