Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq18420 140 3e-28
seq4808 87.8 1e-12
>seq18420
Length=14899
Score = 140 bits (154), Expect = 3e-28
Identities = 312/466 (67%), Gaps = 12/466 (3%)
Strand=Plus/Plus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| || || ||||||||||| ||| |||| |||| ||| || | || || | ||
Sbjct 6399 CCCAAGATCGTCAATGGTCCTGAGATCCTAAACAAATTTGTGGGAGAGTCTGAGAAGAAC 6458
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTC- 19547
| ||| ||||||||||| ||||||| |||| | ||| | |||| | || ||
Sbjct 6459 ATTCGAGAGTTGTTTGCTGATGCTGAAGTAGAATACAAA-GCAAAGGGAGATGAA--TCA 6515
Query 19548 --TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---- 19601
||| ||||| || || | ||||||||||| ||||| || || |||||||| ||
Sbjct 6516 GGTTTACACATCATCATTTTCGATGAATTGGATGCAATTTGCAAACAAAGAGGATCAACG 6575
Query 19602 --TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGT 19659
||| | | |||||| ||| | || || |||||||| || || || | ||||||
Sbjct 6576 GGTGGAGGGACTGGAGTGGGTGATTCGGTCGTGAATCAACTTCTCTCCAAGATGGACGGT 6635
Query 19660 GTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGAC 19719
|| ||||||| || || || || | || || ||||| ||| | || || | || ||
Sbjct 6636 GTAGACCAACTTAACAACATCTTGATCATCGGAATGACCAATCGTCTAGACATGATTGAT 6695
Query 19720 AGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779
|| | |||||||| ||||| |||||| | | || || || ||||| |||||
Sbjct 6696 GAAGCACTTTTACGACCTGGTCGATTGGAAGTTCACATGGAGATCTCTTTACCTGATGAG 6755
Query 19780 TGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTA 19839
| || || | |||| | || || ||||| ||| ||| | |||||| | |
Sbjct 6756 GGAGGTCGACTACAAATCCTGAATATCCATACGGCAAAGATGAGGACAAATAATGTGATG 6815
Query 19840 AATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACT 19885
| ||||| |||||||||| | || || ||||| ||||
Sbjct 6816 GCAGGTGATGTGATTCTAGAAGAATTAGCTGCATTAACCAAGAACT 6861
>seq4808
Length=7665
Score = 87.8 bits (96), Expect = 1e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 44170 AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229
|||||| || ||| |||| |||||| | |||||||| || ||||||||||| |||| ||
Sbjct 6302 AGGATCCTTCGCGTCCATCTTTTGGCTCAAGAAACGCGGCTTGATGCCTGGTCTGACATT 6361
Query 44230 TTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280
||||| ||||| || |||||||||||| | || ||| ||||| ||
Sbjct 6362 CTCAAACGAGTTGATCTCCCGTGATGAAGGCCTCCACACCGACTTTGCCTG 6412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397350599512795
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |