Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq18420 140 3e-28 seq4808 87.8 1e-12 >seq18420 Length=14899 Score = 140 bits (154), Expect = 3e-28 Identities = 312/466 (67%), Gaps = 12/466 (3%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || ||||||||||| ||| |||| |||| ||| || | || || | || Sbjct 6399 CCCAAGATCGTCAATGGTCCTGAGATCCTAAACAAATTTGTGGGAGAGTCTGAGAAGAAC 6458 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTC- 19547 | ||| ||||||||||| ||||||| |||| | ||| | |||| | || || Sbjct 6459 ATTCGAGAGTTGTTTGCTGATGCTGAAGTAGAATACAAA-GCAAAGGGAGATGAA--TCA 6515 Query 19548 --TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---- 19601 ||| ||||| || || | ||||||||||| ||||| || || |||||||| || Sbjct 6516 GGTTTACACATCATCATTTTCGATGAATTGGATGCAATTTGCAAACAAAGAGGATCAACG 6575 Query 19602 --TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGT 19659 ||| | | |||||| ||| | || || |||||||| || || || | |||||| Sbjct 6576 GGTGGAGGGACTGGAGTGGGTGATTCGGTCGTGAATCAACTTCTCTCCAAGATGGACGGT 6635 Query 19660 GTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGAC 19719 || ||||||| || || || || | || || ||||| ||| | || || | || || Sbjct 6636 GTAGACCAACTTAACAACATCTTGATCATCGGAATGACCAATCGTCTAGACATGATTGAT 6695 Query 19720 AGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779 || | |||||||| ||||| |||||| | | || || || ||||| ||||| Sbjct 6696 GAAGCACTTTTACGACCTGGTCGATTGGAAGTTCACATGGAGATCTCTTTACCTGATGAG 6755 Query 19780 TGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTA 19839 | || || | |||| | || || ||||| ||| ||| | |||||| | | Sbjct 6756 GGAGGTCGACTACAAATCCTGAATATCCATACGGCAAAGATGAGGACAAATAATGTGATG 6815 Query 19840 AATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACT 19885 | ||||| |||||||||| | || || ||||| |||| Sbjct 6816 GCAGGTGATGTGATTCTAGAAGAATTAGCTGCATTAACCAAGAACT 6861 >seq4808 Length=7665 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 44170 AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229 |||||| || ||| |||| |||||| | |||||||| || ||||||||||| |||| || Sbjct 6302 AGGATCCTTCGCGTCCATCTTTTGGCTCAAGAAACGCGGCTTGATGCCTGGTCTGACATT 6361 Query 44230 TTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 ||||| ||||| || |||||||||||| | || ||| ||||| || Sbjct 6362 CTCAAACGAGTTGATCTCCCGTGATGAAGGCCTCCACACCGACTTTGCCTG 6412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397350599512795