Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq9033 91.5 2e-13
seq18860 84.2 3e-11
>seq9033
Length=2832
Score = 91.5 bits (100), Expect = 2e-13
Identities = 312/481 (65%), Gaps = 14/481 (3%)
Strand=Plus/Minus
Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402
||||||||| | || || ||||| || ||||| || ||| || ||||| |
Sbjct 2505 CCACATATCGTATTGTAGTTCTCCTTGACTAGCGGGCGAACCAGGAAACGTTTCATACGC 2446
Query 118403 GCCCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTC 118459
||| ||| || | || | ||| ||| || || || |||||||| || | ||| ||
Sbjct 2445 GCCTTCAGCCACGGCAAGCTCGTTTGAG---GCTTCAAGCGCTGCGTGGTAAAGTGTCTC 2389
Query 118460 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAAT 118519
|| || | ||||||| | |||||| || || || || | || | || | |
Sbjct 2388 GAAGATCTGGGCATTCAATTTCTTGGCTTCCGGTGAGTCGAATGGAAG-CTTCAAGATGT 2330
Query 118520 -AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 118578
|||| |||| || | || || |||| ||||| || ||||||||||| || ||||
Sbjct 2329 GAAATGCATCTGCCAATCCGGATACTCCGATTCCAATGGGACGATGTCTCATGTTGGACT 2270
Query 118579 TCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 118638
| ||| | ||||| || ||||| ||| || | | ||| | || || |
Sbjct 2269 TTTTAGCTTCCGGAACGGGGTAGTAATTCACATCAATTATACGATTCAAGTTCCACGTAA 2210
Query 118639 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT 118698
| |||| || | ||| || ||||||| | || || | || || | || ||| ||
Sbjct 2209 CTTCCTTCGTCACTTCGTGCAGCTTTTGGAAAGCATA-----GACTC-CATCGGTGATAT 2156
Query 118699 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 118758
|| | || || ||||| || ||||| |||| || | |||||| | | ||||
Sbjct 2155 ACGTCGGCAGCGCGATCGAGGCCAGGCTACAGACCGCCACCTCATCTGGGGCTGAATACT 2096
Query 118759 CTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACT 118818
| || || || || |||| ||| || ||| |||||||| | |||||||||||| || |
Sbjct 2095 CCATGATCTCAGTACACAGGTTCGATGACTTGATGGTGCCAAGGTTCTTTTGATTCGATT 2036
Query 118819 T 118819
|
Sbjct 2035 T 2035
>seq18860
Length=11993
Score = 84.2 bits (92), Expect = 3e-11
Identities = 175/259 (68%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 179863 TTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGT 179922
|| ||||||||||| |||| || ||||||| | | || ||| || | | | |
Sbjct 10561 TTGCCTTGTTGAAGTCCCATAATTTTCTTGATGTGTTGGATCTCAGCATTCGCTAACAAT 10620
Query 179923 TG--CGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGT 179980
|| |||||| || ||||| || ||| || ||||| || ||||| ||||| |
Sbjct 10621 TGACTTCCACTG--GCTTCTCGAACGTTTAGTAGTTTTCCACGAAGTGGGAAAACACCAT 10678
Query 179981 AGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCT 180040
| | |||||| || | || || | |||||||| || | || || || ||||| || |
Sbjct 10679 AATTATCACGTCCGATGACCGATAATCCAGCAACAGCCAAGGATTTGGCTGAATCTCCTT 10738
Query 180041 CCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCA 180100
|||| | |||||| ||||| | | | | || |||||||| || || || || ||||
Sbjct 10739 CCGTTAAGATGAGAGTACAATCTGCTGCTTTCTTGGTCCCTGCGTTATTGGCATCTTCCA 10798
Query 180101 ACTTGGGAATACCAGTAAT 180119
| ||| ||||| || ||
Sbjct 10799 ATTTGACGATACCGGTGAT 10817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618266993356040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |