Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9033 91.5 2e-13 seq18860 84.2 3e-11 >seq9033 Length=2832 Score = 91.5 bits (100), Expect = 2e-13 Identities = 312/481 (65%), Gaps = 14/481 (3%) Strand=Plus/Minus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 ||||||||| | || || ||||| || ||||| || ||| || ||||| | Sbjct 2505 CCACATATCGTATTGTAGTTCTCCTTGACTAGCGGGCGAACCAGGAAACGTTTCATACGC 2446 Query 118403 GCCCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTC 118459 ||| ||| || | || | ||| ||| || || || |||||||| || | ||| || Sbjct 2445 GCCTTCAGCCACGGCAAGCTCGTTTGAG---GCTTCAAGCGCTGCGTGGTAAAGTGTCTC 2389 Query 118460 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAAT 118519 || || | ||||||| | |||||| || || || || | || | || | | Sbjct 2388 GAAGATCTGGGCATTCAATTTCTTGGCTTCCGGTGAGTCGAATGGAAG-CTTCAAGATGT 2330 Query 118520 -AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 118578 |||| |||| || | || || |||| ||||| || ||||||||||| || |||| Sbjct 2329 GAAATGCATCTGCCAATCCGGATACTCCGATTCCAATGGGACGATGTCTCATGTTGGACT 2270 Query 118579 TCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 118638 | ||| | ||||| || ||||| ||| || | | ||| | || || | Sbjct 2269 TTTTAGCTTCCGGAACGGGGTAGTAATTCACATCAATTATACGATTCAAGTTCCACGTAA 2210 Query 118639 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT 118698 | |||| || | ||| || ||||||| | || || | || || | || ||| || Sbjct 2209 CTTCCTTCGTCACTTCGTGCAGCTTTTGGAAAGCATA-----GACTC-CATCGGTGATAT 2156 Query 118699 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 118758 || | || || ||||| || ||||| |||| || | |||||| | | |||| Sbjct 2155 ACGTCGGCAGCGCGATCGAGGCCAGGCTACAGACCGCCACCTCATCTGGGGCTGAATACT 2096 Query 118759 CTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACT 118818 | || || || || |||| ||| || ||| |||||||| | |||||||||||| || | Sbjct 2095 CCATGATCTCAGTACACAGGTTCGATGACTTGATGGTGCCAAGGTTCTTTTGATTCGATT 2036 Query 118819 T 118819 | Sbjct 2035 T 2035 >seq18860 Length=11993 Score = 84.2 bits (92), Expect = 3e-11 Identities = 175/259 (68%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 179863 TTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGT 179922 || ||||||||||| |||| || ||||||| | | || ||| || | | | | Sbjct 10561 TTGCCTTGTTGAAGTCCCATAATTTTCTTGATGTGTTGGATCTCAGCATTCGCTAACAAT 10620 Query 179923 TG--CGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGT 179980 || |||||| || ||||| || ||| || ||||| || ||||| ||||| | Sbjct 10621 TGACTTCCACTG--GCTTCTCGAACGTTTAGTAGTTTTCCACGAAGTGGGAAAACACCAT 10678 Query 179981 AGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCT 180040 | | |||||| || | || || | |||||||| || | || || || ||||| || | Sbjct 10679 AATTATCACGTCCGATGACCGATAATCCAGCAACAGCCAAGGATTTGGCTGAATCTCCTT 10738 Query 180041 CCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCA 180100 |||| | |||||| ||||| | | | | || |||||||| || || || || |||| Sbjct 10739 CCGTTAAGATGAGAGTACAATCTGCTGCTTTCTTGGTCCCTGCGTTATTGGCATCTTCCA 10798 Query 180101 ACTTGGGAATACCAGTAAT 180119 | ||| ||||| || || Sbjct 10799 ATTTGACGATACCGGTGAT 10817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618266993356040