Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq21128 113 5e-20
seq9033 113 5e-20
>seq21128
Length=23319
Score = 113 bits (124), Expect = 5e-20
Identities = 406/626 (65%), Gaps = 18/626 (3%)
Strand=Plus/Minus
Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025
||||||||||| | ||| |||||| || || || ||||| || ||| | || |
Sbjct 15567 AATCAAAAGAACCTTGGTACCATCAAGTCATCGAACCTGTGTACTGAGATCATCGAGTAC 15508
Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085
||| | ||| ||| ||| || |||||||| || || || || || || | |||| |
Sbjct 15507 TCAGCCCCAGACGAGGTGGCGGTTTGTAACCTGGCCTCGATAGCGCTGCCGACGTATAT- 15449
Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145
|| || || | | ||||| |||| || |||||||| ||||| |||||
Sbjct 15448 ----CACCGATGGAGTC-TATGATTTCCAAAAGCTACACGAAGTAACGAAGGAAGTCACG 15394
Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCT 105205
||| | || | | |||||| || | ||||||||| | ||| || ||
Sbjct 15393 TGGAACTTGAATCGTATAATTGATGTGAACTACTACCCCGTTCCGGAAGCTAAAAAGTCC 15334
Query 105206 AATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTC--ATTC 105263
|| |||||||| ||||| ||||| | || || | || | || |||| |||| | ||
Sbjct 15333 AACATGAGACATCGTCCCATTGGAATTGGAGTAAATGGATTGGCAGATGCATTCCAAATC 15274
Query 105264 TTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGA 105323
||| || | |||| || || ||||| ||| || | || || | || |||||||
Sbjct 15273 -TTGAAGCTTC-CATTCGACTCACCGGAAGCTAAGAAATTGAACGCCCAGATCTTTGAGA 15216
Query 105324 CCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCAT 105380
| | || ||||| || ||||| || ||| ||| | || | ||| || || |||
Sbjct 15215 CACTTTACCACGCAGCACTTGAAGC---CTCAAACGAGCTTGCCGTGGTGGAAGGCGCAT 15159
Query 105381 ATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAG 105440
||||||| ||| ||||| || ||| ||||| | || || | ||||||||||
Sbjct 15158 ATGAAACGTTTCCCGGTTCGCCCGCTAGTCAAGGAGAACTACAGTACGATATGTGGG-GC 15100
Query 105441 GTGAGACCAAGCTTCACTACGAC-TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGT 105499
|| | ||| | | ||| ||||| | ||| || ||| || |||| | ||
Sbjct 15099 GTCACACCCTCCGACCTGTGGACATGGGACGATCTGAAAGAAAAGATTAAGGCTACCGGC 15040
Query 105500 CTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 105559
|| | ||| || | | || || ||||| || || || ||| |||||| |||||
Sbjct 15039 CTGAGAAACTCACTTTTGCTTGCGCCGATGCCTACTGCTTCGACCAGTCAAATCATGGGT 14980
Query 105560 AATAATGAATGCTTTGAACCCTACAC 105585
|||||||| ||||| || |||||
Sbjct 14979 TTCAATGAATGTTTTGAGCCTTACAC 14954
>seq9033
Length=2832
Score = 113 bits (124), Expect = 5e-20
Identities = 408/627 (65%), Gaps = 20/627 (3%)
Strand=Plus/Plus
Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025
||||||||||| | || |||||| || || || ||||| || ||| |||| | |
Sbjct 2041 AATCAAAAGAACCTTGGCACCATCAAGTCATCGAACCTGTGTACTGAGATCATGGAGTAT 2100
Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085
||| | ||||||| ||| || |||| ||| || || ||||| || || | |||| |
Sbjct 2101 TCAGCCCCAGATGAGGTGGCGGTCTGTAGCCTGGCCTCGATCGCGCTGCCGACGTATAT- 2159
Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145
|| || || | | || || |||| || |||||||| ||||| || ||
Sbjct 2160 ----CACCGATGGAGTC-TATGCTTTCCAAAAGCTGCACGAAGTGACGAAGGAAGTTACG 2214
Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCT 105205
||| | || | | |||||| |||| ||||||||| | ||| || ||
Sbjct 2215 TGGAACTTGAATCGTATAATTGATGTGAATTACTACCCCGTTCCGGAAGCTAAAAAGTCC 2274
Query 105206 AATATGAGACACCGTCCAATTGGTCTCGGTGT-TCAGGGTCTCGCGGATGTA-TTCATTC 105263
|| |||||||| ||||| ||||| |||| || || || | | || |||| | ||||
Sbjct 2275 AACATGAGACATCGTCCCATTGGAATCGGAGTATCCGGAT-TGGCAGATGCATTTCACAT 2333
Query 105264 TTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGA 105323
||| || | |||| || || ||||| ||| || | ||||| | || || ||||
Sbjct 2334 CTTGAAGCTTC-CATTCGACTCACCGGAAGCCAAGAAATTGAATGCCCAGATCTTCGAGA 2392
Query 105324 CCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCAT 105380
| | || ||||| || ||||| || ||| ||| | || | || ||| || | |
Sbjct 2393 CACTTTACCACGCAGCGCTTGAAGC---CTCAAACGAGCTTGCCGTGGCTGAAGGCGCGT 2449
Query 105381 ATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAG 105440
||||||| ||| ||||| || ||| ||||| | || |||| ||||||||||
Sbjct 2450 ATGAAACGTTTCCTGGTTCGCCCGCTAGTCAAGGAGAACTACAATACGATATGTGGG-GC 2508
Query 105441 GTGAGACCAAGCTTCACTACG--ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGG 105498
|| | ||| | | || | | ||||| | ||| || ||| ||||||| | ||
Sbjct 2509 GTCACACCTTCCGAC-CTGTGGAAATGGGACGATCTGAAAGAAAAAATCAAGGCTACCGG 2567
Query 105499 TCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGG 105558
| | ||| || | || |||||||| || || || ||| |||||| ||||
Sbjct 2568 CTTAAGAAACTCACTTTCGCTTGCGCCAATGCCTACTGCTTCGACCAGTCAAATCATGGG 2627
Query 105559 TAATAATGAATGCTTTGAACCCTACAC 105585
|||||||| ||||| || |||||
Sbjct 2628 GTTCAATGAATGTTTTGAGCCTTACAC 2654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583102160353160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |