Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq21128 113 5e-20 seq9033 113 5e-20 >seq21128 Length=23319 Score = 113 bits (124), Expect = 5e-20 Identities = 406/626 (65%), Gaps = 18/626 (3%) Strand=Plus/Minus Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 ||||||||||| | ||| |||||| || || || ||||| || ||| | || | Sbjct 15567 AATCAAAAGAACCTTGGTACCATCAAGTCATCGAACCTGTGTACTGAGATCATCGAGTAC 15508 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 ||| | ||| ||| ||| || |||||||| || || || || || || | |||| | Sbjct 15507 TCAGCCCCAGACGAGGTGGCGGTTTGTAACCTGGCCTCGATAGCGCTGCCGACGTATAT- 15449 Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145 || || || | | ||||| |||| || |||||||| ||||| ||||| Sbjct 15448 ----CACCGATGGAGTC-TATGATTTCCAAAAGCTACACGAAGTAACGAAGGAAGTCACG 15394 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCT 105205 ||| | || | | |||||| || | ||||||||| | ||| || || Sbjct 15393 TGGAACTTGAATCGTATAATTGATGTGAACTACTACCCCGTTCCGGAAGCTAAAAAGTCC 15334 Query 105206 AATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTC--ATTC 105263 || |||||||| ||||| ||||| | || || | || | || |||| |||| | || Sbjct 15333 AACATGAGACATCGTCCCATTGGAATTGGAGTAAATGGATTGGCAGATGCATTCCAAATC 15274 Query 105264 TTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGA 105323 ||| || | |||| || || ||||| ||| || | || || | || ||||||| Sbjct 15273 -TTGAAGCTTC-CATTCGACTCACCGGAAGCTAAGAAATTGAACGCCCAGATCTTTGAGA 15216 Query 105324 CCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCAT 105380 | | || ||||| || ||||| || ||| ||| | || | ||| || || ||| Sbjct 15215 CACTTTACCACGCAGCACTTGAAGC---CTCAAACGAGCTTGCCGTGGTGGAAGGCGCAT 15159 Query 105381 ATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAG 105440 ||||||| ||| ||||| || ||| ||||| | || || | |||||||||| Sbjct 15158 ATGAAACGTTTCCCGGTTCGCCCGCTAGTCAAGGAGAACTACAGTACGATATGTGGG-GC 15100 Query 105441 GTGAGACCAAGCTTCACTACGAC-TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGT 105499 || | ||| | | ||| ||||| | ||| || ||| || |||| | || Sbjct 15099 GTCACACCCTCCGACCTGTGGACATGGGACGATCTGAAAGAAAAGATTAAGGCTACCGGC 15040 Query 105500 CTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 105559 || | ||| || | | || || ||||| || || || ||| |||||| ||||| Sbjct 15039 CTGAGAAACTCACTTTTGCTTGCGCCGATGCCTACTGCTTCGACCAGTCAAATCATGGGT 14980 Query 105560 AATAATGAATGCTTTGAACCCTACAC 105585 |||||||| ||||| || ||||| Sbjct 14979 TTCAATGAATGTTTTGAGCCTTACAC 14954 >seq9033 Length=2832 Score = 113 bits (124), Expect = 5e-20 Identities = 408/627 (65%), Gaps = 20/627 (3%) Strand=Plus/Plus Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 ||||||||||| | || |||||| || || || ||||| || ||| |||| | | Sbjct 2041 AATCAAAAGAACCTTGGCACCATCAAGTCATCGAACCTGTGTACTGAGATCATGGAGTAT 2100 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 ||| | ||||||| ||| || |||| ||| || || ||||| || || | |||| | Sbjct 2101 TCAGCCCCAGATGAGGTGGCGGTCTGTAGCCTGGCCTCGATCGCGCTGCCGACGTATAT- 2159 Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145 || || || | | || || |||| || |||||||| ||||| || || Sbjct 2160 ----CACCGATGGAGTC-TATGCTTTCCAAAAGCTGCACGAAGTGACGAAGGAAGTTACG 2214 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCT 105205 ||| | || | | |||||| |||| ||||||||| | ||| || || Sbjct 2215 TGGAACTTGAATCGTATAATTGATGTGAATTACTACCCCGTTCCGGAAGCTAAAAAGTCC 2274 Query 105206 AATATGAGACACCGTCCAATTGGTCTCGGTGT-TCAGGGTCTCGCGGATGTA-TTCATTC 105263 || |||||||| ||||| ||||| |||| || || || | | || |||| | |||| Sbjct 2275 AACATGAGACATCGTCCCATTGGAATCGGAGTATCCGGAT-TGGCAGATGCATTTCACAT 2333 Query 105264 TTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGA 105323 ||| || | |||| || || ||||| ||| || | ||||| | || || |||| Sbjct 2334 CTTGAAGCTTC-CATTCGACTCACCGGAAGCCAAGAAATTGAATGCCCAGATCTTCGAGA 2392 Query 105324 CCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCAT 105380 | | || ||||| || ||||| || ||| ||| | || | || ||| || | | Sbjct 2393 CACTTTACCACGCAGCGCTTGAAGC---CTCAAACGAGCTTGCCGTGGCTGAAGGCGCGT 2449 Query 105381 ATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAG 105440 ||||||| ||| ||||| || ||| ||||| | || |||| |||||||||| Sbjct 2450 ATGAAACGTTTCCTGGTTCGCCCGCTAGTCAAGGAGAACTACAATACGATATGTGGG-GC 2508 Query 105441 GTGAGACCAAGCTTCACTACG--ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGG 105498 || | ||| | | || | | ||||| | ||| || ||| ||||||| | || Sbjct 2509 GTCACACCTTCCGAC-CTGTGGAAATGGGACGATCTGAAAGAAAAAATCAAGGCTACCGG 2567 Query 105499 TCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGG 105558 | | ||| || | || |||||||| || || || ||| |||||| |||| Sbjct 2568 CTTAAGAAACTCACTTTCGCTTGCGCCAATGCCTACTGCTTCGACCAGTCAAATCATGGG 2627 Query 105559 TAATAATGAATGCTTTGAACCCTACAC 105585 |||||||| ||||| || ||||| Sbjct 2628 GTTCAATGAATGTTTTGAGCCTTACAC 2654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583102160353160