Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq19309 161 1e-34 seq20561 89.7 6e-13 >seq19309 Length=20099 Score = 161 bits (178), Expect = 1e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||| || || ||||| || ||||| || ||| || | || | || | ||| Sbjct 1713 CTTACCGGTAAAACAATTACGCTGGAGGTCGAATCATCCGACACGATCGACAACGTCAAG 1772 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || ||||| ||||||||||| || ||||| ||||| || || ||||| |||||||||||| Sbjct 1773 GCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGT 1832 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || ||||| || |||| ||| || || || || || ||| |||| |||||||| |||||| Sbjct 1833 AAACAACTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAGAAGGAATCAACTCTT 1892 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||| || | ||||| || |||||| Sbjct 1893 CATCTTGTGCTCCGTCTACGTGGTGGA 1919 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||||||||| || || || |||||||| || |||| ||||| ||| | ||| Sbjct 1135 CTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAG 1194 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || ||||| ||||| || || ||||| |||||||| || ||||| || ||||| || Sbjct 1195 GCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || ||||| || |||| || ||||| || || || || | || ||||||||||||||| Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| | || | ||||| || ||||| Sbjct 1315 CATTTGGTACTCCGTCTGCGTGGTGG 1340 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || || || || || |||||| |||| |||| ||| | || Sbjct 2001 CTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAAA 2060 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || |||||||||||||| || || || |||||||| ||||| |||| ||||| ||| Sbjct 2061 GCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGT 2120 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || ||| | || || | || || || || || || || | |||||||| || |||||| Sbjct 2121 AAACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTT 2180 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAA 27642 || | |||||||| | || || || ||| | ||| Sbjct 2181 CACTTGGTCTTGCGATTACGTGGAGGTCAAATGTAA 2216 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || ||||| || || || || || | |||| ||| | ||||| Sbjct 1430 ACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGCC 1489 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| ||||||||||| || ||||| || || || ||||| || ||||| || ||| Sbjct 1490 AAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAAAG 1549 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| || || | ||| || || || ||||| || | || || || ||||| ||||| Sbjct 1550 CAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTCAC 1609 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | |||||||| ||||| Sbjct 1610 TTGGTTCTTCGTCTTCGTGGTGG 1632 >seq20561 Length=8220 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600 || ||||||||||| ||||| | ||| ||||| || ||||| || |||| ||||| || Sbjct 5943 GCCGGTAAGCAACTTGAGGACGGTCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCG 6002 Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||| | ||||| |||||||| ||||| Sbjct 6003 ACTCTTCATTTGGTCTTACGTCTTCGTGGTGG 6034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570155282700080