Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 161 1e-34
seq20561 89.7 6e-13
>seq19309
Length=20099
Score = 161 bits (178), Expect = 1e-34
Identities = 160/207 (77%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
|||||||| || || ||||| || ||||| || ||| || | || | || | |||
Sbjct 1713 CTTACCGGTAAAACAATTACGCTGGAGGTCGAATCATCCGACACGATCGACAACGTCAAG 1772
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
|| ||||| ||||||||||| || ||||| ||||| || || ||||| ||||||||||||
Sbjct 1773 GCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATTTTTGCTGGT 1832
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606
|| ||||| || |||| ||| || || || || || ||| |||| |||||||| ||||||
Sbjct 1833 AAACAACTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAGAAGGAATCAACTCTT 1892
Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGA 27633
||||| || | ||||| || ||||||
Sbjct 1893 CATCTTGTGCTCCGTCTACGTGGTGGA 1919
Score = 150 bits (166), Expect = 2e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
|| ||||||||||| || || || |||||||| || |||| ||||| ||| | |||
Sbjct 1135 CTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAG 1194
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
|| || ||||| ||||| || || ||||| |||||||| || ||||| || ||||| ||
Sbjct 1195 GCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606
|| ||||| || |||| || ||||| || || || || | || |||||||||||||||
Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314
Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632
||| | || | ||||| || |||||
Sbjct 1315 CATTTGGTACTCCGTCTGCGTGGTGG 1340
Score = 123 bits (136), Expect = 3e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
|| || || ||||| || || || || || |||||| |||| |||| ||| | ||
Sbjct 2001 CTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAAA 2060
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
|| || |||||||||||||| || || || |||||||| ||||| |||| ||||| |||
Sbjct 2061 GCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGT 2120
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606
|| ||| | || || | || || || || || || || | |||||||| || ||||||
Sbjct 2121 AAACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTT 2180
Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAA 27642
|| | |||||||| | || || || ||| | |||
Sbjct 2181 CACTTGGTCTTGCGATTACGTGGAGGTCAAATGTAA 2216
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| || ||||| || ||||| || || || || || | |||| ||| | |||||
Sbjct 1430 ACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGCC 1489
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||| ||||||||||| || ||||| || || || ||||| || ||||| || |||
Sbjct 1490 AAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAAAG 1549
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||| || || | ||| || || || ||||| || | || || || ||||| |||||
Sbjct 1550 CAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTCAC 1609
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| || | |||||||| |||||
Sbjct 1610 TTGGTTCTTCGTCTTCGTGGTGG 1632
>seq20561
Length=8220
Score = 89.7 bits (98), Expect = 6e-13
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600
|| ||||||||||| ||||| | ||| ||||| || ||||| || |||| ||||| ||
Sbjct 5943 GCCGGTAAGCAACTTGAGGACGGTCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCG 6002
Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||||| | ||||| |||||||| |||||
Sbjct 6003 ACTCTTCATTTGGTCTTACGTCTTCGTGGTGG 6034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570155282700080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |