Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq19309 125 4e-24 >seq19309 Length=20099 Score = 125 bits (138), Expect = 4e-24 Identities = 101/122 (83%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 ||||| ||||| || ||||| ||||||||||||||| ||||| | |||||||||| || Sbjct 2194 CGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGCCCG 2135 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| | ||||||||| ||||| ||||| ||||||||||| || || | || |||||| Sbjct 2134 TCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCCTTG 2075 Query 34612 TC 34613 || Sbjct 2074 TC 2073 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| |||||| ||||| |||||||| ||||| | || || || Sbjct 1331 AGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGT 1272 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||||||||| |||||||| || | ||| |||||||| || || | || || Sbjct 1271 CCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCT 1212 Query 34609 TTGTCTGTGATCTT 34622 |||||| ||||| Sbjct 1211 TTGTCTTGAATCTT 1198 Score = 91.5 bits (100), Expect = 9e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || ||| ||| || |||||||| || || | Sbjct 1632 CCACCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCG 1573 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||||||||| || || ||||| || | ||| ||||| || || || Sbjct 1572 AGAGTTCGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAGGG 1513 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| ||||| Sbjct 1512 ATACCCTCCTTGTCTTGAATCTT 1490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314646137545847