Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 125 4e-24
>seq19309
Length=20099
Score = 125 bits (138), Expect = 4e-24
Identities = 101/122 (83%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551
||||| ||||| || ||||| ||||||||||||||| ||||| | |||||||||| ||
Sbjct 2194 CGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGCCCG 2135
Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611
||||| | ||||||||| ||||| ||||| ||||||||||| || || | || ||||||
Sbjct 2134 TCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCCTTG 2075
Query 34612 TC 34613
||
Sbjct 2074 TC 2073
Score = 98.7 bits (108), Expect = 6e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||||| |||||| ||||| |||||||| ||||| | || || ||
Sbjct 1331 AGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGT 1272
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| |||||||||||||| |||||||| || | ||| |||||||| || || | || ||
Sbjct 1271 CCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCT 1212
Query 34609 TTGTCTGTGATCTT 34622
|||||| |||||
Sbjct 1211 TTGTCTTGAATCTT 1198
Score = 91.5 bits (100), Expect = 9e-14
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | ||||| || || ||| ||| || |||||||| || || |
Sbjct 1632 CCACCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCG 1573
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| ||||||||||||| || || ||||| || | ||| ||||| || || ||
Sbjct 1572 AGAGTTCGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAGGG 1513
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| |||||||||||| |||||
Sbjct 1512 ATACCCTCCTTGTCTTGAATCTT 1490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314646137545847
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |