Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq19309 140 3e-28 >seq19309 Length=20099 Score = 140 bits (154), Expect = 3e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 27008 TCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAA 27067 |||||| || ||| | || || || ||||| || | || || | ||||| | ||||| Sbjct 2000 TCTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAA 2059 Query 27068 ACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127 | || ||||| ||||| ||||| || ||||| || |||||||| ||||| | || || Sbjct 2060 AGCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGG 2119 Query 27128 CAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTT 27187 ||||||||||||||| | || || ||||||||||||||||||||||||| || | Sbjct 2120 TAAACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCT 2179 Query 27188 ACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| ||||| || || || || Sbjct 2180 TCACTTGGTCTTGCGATTACGTGGAGG 2206 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || ||||||||| | || || || || || ||| | ||||| | ||||| | ||||| Sbjct 1135 CTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAG 1194 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || ||||||||||||||||| || ||||| || ||||| ||| | || | ||||| Sbjct 1195 GCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 |||||| | ||||| | ||| | |||||||||||||||| ||||| || || | Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| | ||| |||| ||||| || Sbjct 1315 CATTTGGTACTCCGTCTGCGTGGTGGTAT 1343 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| || ||| | || ||||| ||||| ||| | |||||| | ||||| | ||||| Sbjct 1428 TGACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGG 1487 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || ||||||||||| || || || || || |||||||| ||| | || | || || | Sbjct 1488 CCAAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAA 1547 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | ||| | |||||| || || | | || ||||||||||| || ||||| ||| | | Sbjct 1548 AGCAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTC 1607 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | |||||| | ||| | || ||||| || Sbjct 1608 ACTTGGTTCTTCGTCTTCGTGGTGGTAT 1635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434800107631680