Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 140 3e-28
>seq19309
Length=20099
Score = 140 bits (154), Expect = 3e-28
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 27008 TCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAA 27067
|||||| || ||| | || || || ||||| || | || || | ||||| | |||||
Sbjct 2000 TCTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAA 2059
Query 27068 ACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127
| || ||||| ||||| ||||| || ||||| || |||||||| ||||| | || ||
Sbjct 2060 AGCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGG 2119
Query 27128 CAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTT 27187
||||||||||||||| | || || ||||||||||||||||||||||||| || |
Sbjct 2120 TAAACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCT 2179
Query 27188 ACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| ||||| ||||| || || || ||
Sbjct 2180 TCACTTGGTCTTGCGATTACGTGGAGG 2206
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068
|| ||||||||| | || || || || || ||| | ||||| | ||||| | |||||
Sbjct 1135 CTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAG 1194
Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128
|| ||||||||||||||||| || ||||| || ||||| ||| | || | |||||
Sbjct 1195 GCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254
Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188
|||||| | ||||| | ||| | |||||||||||||||| ||||| || || |
Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314
Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||| | ||| |||| ||||| ||
Sbjct 1315 CATTTGGTACTCCGTCTGCGTGGTGGTAT 1343
Score = 114 bits (126), Expect = 1e-20
Identities = 150/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069
|||| || ||| | || ||||| ||||| ||| | |||||| | ||||| | |||||
Sbjct 1428 TGACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGG 1487
Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129
|| ||||||||||| || || || || || |||||||| ||| | || | || || |
Sbjct 1488 CCAAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAA 1547
Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189
| ||| | |||||| || || | | || ||||||||||| || ||||| ||| | |
Sbjct 1548 AGCAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTC 1607
Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
| |||||| | ||| | || ||||| ||
Sbjct 1608 ACTTGGTTCTTCGTCTTCGTGGTGGTAT 1635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434800107631680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |