Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq19309 98.7 7e-16 >seq19309 Length=20099 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || ||||| | || ||||||||||||||| | || Sbjct 1207 GACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGAAAACAACTTGAA 1266 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| | || ||||||||||||| || || || |||| | |||||||| | Sbjct 1267 GATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTTCATTTGGTACTC 1326 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 1327 CGTCTGCGTGGTGG 1340 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | || || || || || ||||| ||||| || ||||||||||| Sbjct 2073 GACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGTAAACAATTGGAA 2132 Query 27943 GACGAACGCA-GCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 |||| || | |||| ||||||||||||| ||||| ||| ||| | || ||||| || Sbjct 2133 GACGGGCGAACACTTG-CCGATTACAACATTCAAAAGGAGTCTACTCTTCACTTGGTCTT 2191 Query 28002 GCGTTTGCGTGGCGG 28016 ||| || ||||| || Sbjct 2192 GCGATTACGTGGAGG 2206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355768029628593