Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 98.7 7e-16
>seq19309
Length=20099
Score = 98.7 bits (108), Expect = 7e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||||||| |||| || || ||||| | || ||||||||||||||| | ||
Sbjct 1207 GACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGAAAACAACTTGAA 1266
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | ||||| | || ||||||||||||| || || || |||| | |||||||| |
Sbjct 1267 GATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTTCATTTGGTACTC 1326
Query 28003 CGTTTGCGTGGCGG 28016
||| ||||||| ||
Sbjct 1327 CGTCTGCGTGGTGG 1340
Score = 87.8 bits (96), Expect = 1e-12
Identities = 102/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| |||||| | || || || || || ||||| ||||| || |||||||||||
Sbjct 2073 GACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGGTAAACAATTGGAA 2132
Query 27943 GACGAACGCA-GCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001
|||| || | |||| ||||||||||||| ||||| ||| ||| | || ||||| ||
Sbjct 2133 GACGGGCGAACACTTG-CCGATTACAACATTCAAAAGGAGTCTACTCTTCACTTGGTCTT 2191
Query 28002 GCGTTTGCGTGGCGG 28016
||| || ||||| ||
Sbjct 2192 GCGATTACGTGGAGG 2206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355768029628593
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |