Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq19309 150 4e-31 seq20561 98.7 2e-15 >seq19309 Length=20099 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| ||||||||||| || ||||| || || || || || Sbjct 1627 ACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGAGT 1568 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||| || ||||| ||||| |||||||| |||||||| |||||||| | || Sbjct 1567 TCGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAGGGATACC 1508 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| || ||||| || || || || || ||||| ||| ||| || ||||| Sbjct 1507 CTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGACTTCGAG 1448 Query 211073 AGTGATCGTCTTTCCCGT 211090 |||||| |||||||| || Sbjct 1447 AGTGATGGTCTTTCCAGT 1430 Score = 143 bits (158), Expect = 6e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||||||||| || || || ||||| ||||| || ||||| | ||||||||| || || Sbjct 1316 TGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATCTTCAAGTTGT 1257 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || ||||||||||| || |||| ||||| ||||| || ||||| Sbjct 1256 TTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGAATCTTG 1197 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || ||||| || || |||||||||||| ||||| ||||| || ||| Sbjct 1196 GCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTGCCGGTG 1137 Query 211092 AG 211093 || Sbjct 1136 AG 1135 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| |||||||| || || || ||||| || ||||| || || || | |||||| Sbjct 1903 AGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCGAGTGTGCGACCATCT 1844 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| || || || || || || || |||||||| || || |||| |||||||||||| Sbjct 1843 TCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGGGAATGCCTTCCTTGTCC 1784 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || ||||| ||||| ||||| || ||| ||||| || || || || Sbjct 1783 TGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCGACCTCCAGCGTAATTGTT 1724 Query 211083 TTTCCCGTGAGA 211094 || || || ||| Sbjct 1723 TTACCGGTAAGA 1712 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||||||||| ||||| ||||| ||||| ||||| ||||| || | || ||||| Sbjct 2189 GACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGCCCGTCTTC 2130 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || ||||| ||||| | || |||||||| || || | |||||||||||||| Sbjct 2129 CAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCCTTGTCCTG 2070 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| ||| || || || || || || || || || ||||| ||||| ||||| Sbjct 2069 AATCTTGGCTTTGACATTGTCAATTGTATCCGATGACTCGACTTCGAGGGTGATGGTCTT 2010 Query 211085 TCCCGTGAGA 211094 || || ||| Sbjct 2009 ACCAGTCAGA 2000 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 ||||||||||| || || | || || |||||||||||||| || ||||| ||||| Sbjct 890 CGTTGTTGGTCTGGCGGGATACCCTCTTTGTCCTGGATCTTGGCCTTGACGTTATCGATA 831 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || |||||||||||| ||||| || || || |||||| Sbjct 830 GTGTCGGAAGATTCAACCTCGAGGGTGATAGTTTTGCCGGTGAGA 786 >seq20561 Length=8220 Score = 98.7 bits (108), Expect = 2e-15 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 210982 AGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGT 211041 ||||||| ||||||||||| || |||| |||||||| || || ||||| ||||| | Sbjct 5872 AGATAAGTCGTTGTTGGTCTGGTGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACAT 5813 Query 211042 TTTCGATGGTGTCAG-AGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 | ||||| ||||| | ||| ||| |||||||| ||||| ||||| |||||||| Sbjct 5812 TGTCGATTGTGTCGGCAGC-TTCGACCTCGAGGGTGATGGTCTTACCCGTGAG 5761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158828843274035