Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 123 2e-23
>seq19309
Length=20099
Score = 123 bits (136), Expect = 2e-23
Identities = 153/207 (74%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAA 23690
|| || || || || ||||| |||||||| || || |||| || |||| ||| | |||
Sbjct 2001 CTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAAA 2060
Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750
| || | || ||||| |||||| | || ||||| |||||||| ||||| ||||| ||
Sbjct 2061 GCCAAGA-TTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGG 2119
Query 23751 CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATT 23810
|||||| ||||||||| || || | | |||||||||||| ||||| ||||| || |
Sbjct 2120 TAAACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCT 2179
Query 23811 ACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || || || | || || |||||
Sbjct 2180 TCACTTGGTCTTGCGATTACGTGGAGG 2206
Score = 120 bits (132), Expect = 2e-22
Identities = 142/190 (75%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAA 23689
|||||| || || || ||||| ||||| ||||| || | || || |||| ||| | ||
Sbjct 1134 CCTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAA 1193
Query 23690 AACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCG 23749
| || | || |||||||||||| | || ||||| ||||| ||| | || |||||||
Sbjct 1194 GGCCAAGA-TTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCG 1252
Query 23750 GCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACAT 23809
| |||||||| ||||| | |||||| | | |||||||||||| || || || |||||
Sbjct 1253 GAAAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTC 1312
Query 23810 TACATTTAGT 23819
| ||||| ||
Sbjct 1313 TTCATTTGGT 1322
Score = 109 bits (120), Expect = 4e-19
Identities = 138/187 (74%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693
|| ||||| || |||||||||||||| || ||| | ||||| |||| ||| | || |
Sbjct 1430 ACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGC- 1488
Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753
|| ||| ||||| || ||| | || || |||||||| ||| | || ||||| || ||
Sbjct 1489 CAAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAAA 1548
Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813
||||| ||||||| || ||| | | || |||||||| || ||||||||||| | ||
Sbjct 1549 GCAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTCA 1608
Query 23814 TTTAGTT 23820
|| |||
Sbjct 1609 CTTGGTT 1615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337919963973572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |