Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq19309 123 2e-23 >seq19309 Length=20099 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAA 23690 || || || || || ||||| |||||||| || || |||| || |||| ||| | ||| Sbjct 2001 CTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAAA 2060 Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750 | || | || ||||| |||||| | || ||||| |||||||| ||||| ||||| || Sbjct 2061 GCCAAGA-TTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGG 2119 Query 23751 CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATT 23810 |||||| ||||||||| || || | | |||||||||||| ||||| ||||| || | Sbjct 2120 TAAACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCT 2179 Query 23811 ACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || | || || ||||| Sbjct 2180 TCACTTGGTCTTGCGATTACGTGGAGG 2206 Score = 120 bits (132), Expect = 2e-22 Identities = 142/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAA 23689 |||||| || || || ||||| ||||| ||||| || | || || |||| ||| | || Sbjct 1134 CCTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAA 1193 Query 23690 AACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCG 23749 | || | || |||||||||||| | || ||||| ||||| ||| | || ||||||| Sbjct 1194 GGCCAAGA-TTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCG 1252 Query 23750 GCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACAT 23809 | |||||||| ||||| | |||||| | | |||||||||||| || || || ||||| Sbjct 1253 GAAAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTC 1312 Query 23810 TACATTTAGT 23819 | ||||| || Sbjct 1313 TTCATTTGGT 1322 Score = 109 bits (120), Expect = 4e-19 Identities = 138/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693 || ||||| || |||||||||||||| || ||| | ||||| |||| ||| | || | Sbjct 1430 ACTGGAAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGC- 1488 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 || ||| ||||| || ||| | || || |||||||| ||| | || ||||| || || Sbjct 1489 CAAGATTCAAGACAAGGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCAGGAAA 1548 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 ||||| ||||||| || ||| | | || |||||||| || ||||||||||| | || Sbjct 1549 GCAACTTGAAGACGGTCGAACTCTCGCTGACTACAACATTCAGAAAGAGTCCACCCTTCA 1608 Query 23814 TTTAGTT 23820 || ||| Sbjct 1609 CTTGGTT 1615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337919963973572