Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 134 3e-26
seq20561 93.3 1e-13
>seq19309
Length=20099
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| ||||||||||| || || | ||||||||||||| || | |||||||| || ||
Sbjct 1316 TGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATCTTCAAGTTGT 1257
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || || ||||| || ||||||||||| || ||||||||||| |||||||| |||||
Sbjct 1256 TTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGAATCTTG 1197
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
||| ||| || ||||| || || | ||| || || | ||||| |||||||| ||
Sbjct 1196 GCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTGCCGGT 1138
Score = 134 bits (148), Expect = 3e-26
Identities = 151/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| || ||||| ||||| || | ||||| || || | |||
Sbjct 1627 ACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGAGT 1568
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| || ||||| || ||||| || || |||||||| |||||||| || || || |||||
Sbjct 1567 TCGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAGGGATACC 1508
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||| ||||| ||| ||| || || ||||| |||| ||| || || |
Sbjct 1507 CTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGACTTCGAG 1448
Query 225672 CGTGATCGTCTTGCCCGTCAAA 225693
||||| ||||| || ||||||
Sbjct 1447 AGTGATGGTCTTTCCAGTCAAA 1426
Score = 118 bits (130), Expect = 3e-21
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| ||||| || ||||| ||||| || |||| ||||||||| || | || | ||||||
Sbjct 1903 AGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCGAGTGTGCGACCATCT 1844
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || || || ||||| || || || |||||||| || || ||||| |||||||||||
Sbjct 1843 TCCAGTTGTTTACCAGCAAAAATCAGACGTTGTTGATCTGGGGGAATGCCTTCCTTGTCC 1784
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
||||| || ||| || ||||| ||||| || | ||| || || | ||| || ||
Sbjct 1783 TGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGATGATTCGACCTCCAGCGTAATTGTT 1724
Query 225682 TTGCCCGT 225689
|| || ||
Sbjct 1723 TTACCGGT 1716
Score = 109 bits (120), Expect = 1e-18
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| | || || ||| | ||| ||||| || || ||||| | ||||||||||| | ||
Sbjct 2201 ACGTAATCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGT 2142
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| ||| ||||| | || || || || ||||| | ||| |||||||| || || |||||
Sbjct 2141 TCGCCCGTCTTCCAATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACC 2082
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||| || ||||| || ||| || || || || || | || || || |
Sbjct 2081 TTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATTGTATCCGATGACTCGACTTCGAG 2022
Query 225672 CGTGATCGTCTTGCCCGTCA 225691
||||| ||||| || ||||
Sbjct 2021 GGTGATGGTCTTACCAGTCA 2002
>seq20561
Length=8220
Score = 93.3 bits (102), Expect = 1e-13
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 225581 AGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAG 225640
||||||||||||||||||| || ||||| |||||||| ||||| ||||| |||||||
Sbjct 5872 AGATAAGTCGTTGTTGGTCTGGTGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACAT 5813
Query 225641 CTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
||||| ||||| | | ||| || || | ||||| ||||| |||||
Sbjct 5812 TGTCGATTGTGTCGGCAGCTTCGACCTCGAGGGTGATGGTCTTACCCGT 5764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192198737580746
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |