Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq4808 116 5e-21
>seq4808
Length=7665
Score = 116 bits (128), Expect = 5e-21
Identities = 154/213 (72%), Gaps = 3/213 (1%)
Strand=Plus/Minus
Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010
|| || || || || || ||||| ||||||| || |||||| || |||| ||||
Sbjct 5943 ATTTGGAAGCCATAGAAGCATCTGGCTTCAGCCGCTTGAACCTCTCCACTGAATCTTTCA 5884
Query 47011 GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATA 47070
||| || || || || |||||||| ||||||||| || || || |||||||| |||
Sbjct 5883 ATCAAGTTTTCGTTGACAATTCCATCCGAAGCAGCAAAGAAAGCTAAGACATGTTTGATA 5824
Query 47071 AAATATTTTTCATCGGTAGTCAGTTTATTC---CAGTCATTGATATCTTTTGATATATCT 47127
|| | ||| ||||| | ||| | | ||| || || | ||||| || || | |||
Sbjct 5823 AAGTGTTTCTCATCATCATTCAATCTGTTCTCCCAATCGTGCATATCCTTCGAAAGATCG 5764
Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160
| |||||| |||||||||||||| ||||| |||
Sbjct 5763 ATTTCTTCGGCTGTCCAGAATGAAGCCTCGGCT 5731
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712740490754880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |