Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq19309 102 2e-16 >seq19309 Length=20099 Score = 102 bits (112), Expect = 2e-16 Identities = 136/188 (72%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||||||||| ||||| |||||||||||||| | |||| ||| ||||| | Sbjct 2186 CAAG-TGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGCCCGTCTTCCA 2128 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || ||||| | | ||| ||||| | | ||| |||||||| || |||| Sbjct 2127 ATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCCTTGTCCTGAA 2068 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||||| | || | | || || ||| ||||| || || || || || | Sbjct 2067 TCTTGGCTTTGACATTGTCAATTGTATCCGATGACTCGACTTCGAGGGTGATGGTCTTAC 2008 Query 152077 CCGTGAGA 152084 | || ||| Sbjct 2007 CAGTCAGA 2000 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||||||||| || || || || |||||||||||||| | || | ||||| Sbjct 1326 GAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATC 1267 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| ||||| ||||| || | || ||||| | | || ||||| || || Sbjct 1266 TTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTC 1207 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| || |||||| | || | | | || ||| || || || || || || || Sbjct 1206 TTGAATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGT 1147 Query 152072 TTTGCCCGTGAG 152083 ||||| ||||| Sbjct 1146 CTTGCCGGTGAG 1135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153499129544289