Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 102 2e-16
>seq19309
Length=20099
Score = 102 bits (112), Expect = 2e-16
Identities = 136/188 (72%), Gaps = 1/188 (1%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| |||||||||||||| ||||| |||||||||||||| | |||| ||| ||||| |
Sbjct 2186 CAAG-TGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGCCCGTCTTCCA 2128
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
||| || || ||||| | | ||| ||||| | | ||| |||||||| || ||||
Sbjct 2127 ATTGTTTACCTGCAAAGATTAATCGCTGTTGGTCTGGTGGGATACCTTCCTTGTCCTGAA 2068
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || ||||||| | || | | || || ||| ||||| || || || || || |
Sbjct 2067 TCTTGGCTTTGACATTGTCAATTGTATCCGATGACTCGACTTCGAGGGTGATGGTCTTAC 2008
Query 152077 CCGTGAGA 152084
| || |||
Sbjct 2007 CAGTCAGA 2000
Score = 95.1 bits (104), Expect = 3e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || | ||||||||| || || || || |||||||||||||| | || | |||||
Sbjct 1326 GAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCCAGGGTGCGTCCATC 1267
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
||| || ||| ||||| ||||| || | || ||||| | | || ||||| || ||
Sbjct 1266 TTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTGTC 1207
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|||||| || |||||| | || | | | || ||| || || || || || || ||
Sbjct 1206 TTGAATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGT 1147
Query 152072 TTTGCCCGTGAG 152083
||||| |||||
Sbjct 1146 CTTGCCGGTGAG 1135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153499129544289
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |