Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 172 1e-37
seq20561 89.7 1e-12
>seq19309
Length=20099
Score = 172 bits (190), Expect = 1e-37
Identities = 163/208 (78%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| |||| || | ||| ||||| || ||||||||||||||
Sbjct 1633 ACCACCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGC 1574
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || || || || ||||| || || |||||||| | ||||||||| ||| ||
Sbjct 1573 GAGAGTTCGACCGTCTTCAAGTTGCTTTCCTGCAAAGATAAGACGTTGTTGATCAGGAGG 1514
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||||| ||||| || || || | || || ||||| || | ||||||
Sbjct 1513 GATACCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGAC 1454
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|||||||||||| ||||| || ||||||
Sbjct 1453 TTCGAGAGTGATGGTCTTTCCAGTCAAA 1426
Score = 165 bits (182), Expect = 2e-35
Identities = 159/204 (78%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || ||||||| ||| | ||| ||| || || |||||||| || ||
Sbjct 1341 ACCACCACGCAGACGGAGTACCAAATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGC 1282
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| ||||| || |||||||| ||||||||||| | |||||||||||| ||
Sbjct 1281 CAGGGTGCGTCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGTGG 1222
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||| || |||||||| ||||| || || || | || || || || |||| ||| ||
Sbjct 1221 AATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCGGAAGATTCAAC 1162
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
||||| ||||| ||||| || ||
Sbjct 1161 CTCGAGGGTGATGGTCTTGCCGGT 1138
Score = 134 bits (148), Expect = 3e-26
Identities = 131/169 (78%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| ||||| |||||||| || ||||| || || || || || | |||||| || ||||||
Sbjct 2170 TCCTTTTGAATGTTGTAATCGGCAAGTGTTCGCCCGTCTTCCAATTGTTTACCTGCAAAG 2111
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| || || |||||||| || ||||| |||||||| || ||||| ||||| || |
Sbjct 2110 ATTAATCGCTGTTGGTCTGGTGGGATACCTTCCTTGTCCTGAATCTTGGCTTTGACATTG 2051
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCA 283077
|| || || ||||| | ||||||||||| ||||| |||||||| ||||
Sbjct 2050 TCAATTGTATCCGATGACTCGACTTCGAGGGTGATGGTCTTACCAGTCA 2002
Score = 107 bits (118), Expect = 4e-18
Identities = 88/107 (82%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||||||||||||||| ||| |||||||| ||||| |||||||| || || ||| ||
Sbjct 896 ATCAAACGTTGTTGGTCTGGCGGGATACCCTCTTTGTCCTGGATCTTGGCCTTGACGTTA 837
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
||||||||||| |||| ||| || ||||| ||||| || || || ||
Sbjct 836 TCGATAGTGTCGGAAGATTCAACCTCGAGGGTGATAGTTTTGCCGGT 790
>seq20561
Length=8220
Score = 89.7 bits (98), Expect = 1e-12
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026
|||| | ||||||||||| ||||| || ||||| ||||| ||||| | || ||
Sbjct 5872 AGATAAGTCGTTGTTGGTCTGGTGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACAT 5813
Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
| ||||| ||||| | ||||||||| ||||| ||||| |||||||||||
Sbjct 5812 TGTCGATTGTGTCGGCAGCTTCGACCTCGAGGGTGATGGTCTTACCCGT 5764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046447382522386
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |