Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05- 22] 21,759 sequences; 97,689,000 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq19309 150 4e-31 seq20561 89.7 1e-12 >seq19309 Length=20099 Score = 150 bits (166), Expect = 4e-31 Identities = 143/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || |||||||||||||| ||| || || ||||| || || ||||| Sbjct 1135 CTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAG 1194 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 |||||||| ||||||||||| || || || ||||| ||||| || ||||| |||||| Sbjct 1195 GCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 ||||| || ||||||||| | || || |||||||| ||| | || || ||||| || || Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314 Query 178122 CAT 178124 ||| Sbjct 1315 CAT 1317 Score = 120 bits (132), Expect = 7e-22 Identities = 140/188 (74%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || || || || ||||||||||| || || || || || || || || ||||| Sbjct 2000 TCTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAA 2059 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 | |||||||||||||| ||||| ||||| || ||||| || ||| | ||||| || || Sbjct 2060 AGCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGG 2119 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACT 178120 ||||| | ||||| || | || ||||||||||| ||| | ||||| || || || || Sbjct 2120 TAAACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCT 2179 Query 178121 GCATCTTG 178128 || |||| Sbjct 2180 TCA-CTTG 2186 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 |||||| || ||||| |||||||||||||| ||| || ||||| ||||| |||||||| Sbjct 786 TCTCACCGGCAAAACTATCACCCTCGAGGTTGAATCTTCCGACACTATCGATAACGTCAA 845 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 ||||| ||||||||||| || ||||| || ||||| ||||| Sbjct 846 GGCCAAGATCCAGGACAAAGAGGGTATCCCGCCAGACCAACAACG 890 >seq20561 Length=8220 Score = 89.7 bits (98), Expect = 1e-12 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCT-CAGACACCATCGAGAACGTCAA 178000 ||||| || || || |||||||||||||| | ||||| | ||||| ||||| || || || Sbjct 5761 CTCACGGGTAAGACCATCACCCTCGAGGTCG-AAGCTGCCGACACAATCGACAATGTGAA 5819 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCT 178053 |||||||| || || ||||| || || || ||||| ||||||||||||| Sbjct 5820 GACCAAGATTCAAGAAAAGGAAGGCATTCCACCAGACCAACAACGACTTATCT 5872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203395615164246