Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20occidentalis_20[genbank_20GCA_5F002157085.1_202017-05-
22] 21,759 sequences; 97,689,000 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq19309 150 4e-31
seq20561 89.7 1e-12
>seq19309
Length=20099
Score = 150 bits (166), Expect = 4e-31
Identities = 143/183 (78%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001
||||| || || || |||||||||||||| ||| || || ||||| || || |||||
Sbjct 1135 CTCACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTCAAG 1194
Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061
|||||||| ||||||||||| || || || ||||| ||||| || ||||| ||||||
Sbjct 1195 GCCAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAACAACGTCTCATCTTTGCCGGA 1254
Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121
||||| || ||||||||| | || || |||||||| ||| | || || ||||| || ||
Sbjct 1255 AAACAACTTGAAGATGGACGCACCCTGGCCGATTACAACATTCAGAAGGAATCCACTCTT 1314
Query 178122 CAT 178124
|||
Sbjct 1315 CAT 1317
Score = 120 bits (132), Expect = 7e-22
Identities = 140/188 (74%), Gaps = 1/188 (1%)
Strand=Plus/Plus
Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000
||| || || || || ||||||||||| || || || || || || || || |||||
Sbjct 2000 TCTGACTGGTAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAATGTCAA 2059
Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060
| |||||||||||||| ||||| ||||| || ||||| || ||| | ||||| || ||
Sbjct 2060 AGCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAACAGCGATTAATCTTTGCAGG 2119
Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACT 178120
||||| | ||||| || | || ||||||||||| ||| | ||||| || || || ||
Sbjct 2120 TAAACAATTGGAAGACGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCT 2179
Query 178121 GCATCTTG 178128
|| ||||
Sbjct 2180 TCA-CTTG 2186
Score = 100 bits (110), Expect = 7e-16
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000
|||||| || ||||| |||||||||||||| ||| || ||||| ||||| ||||||||
Sbjct 786 TCTCACCGGCAAAACTATCACCCTCGAGGTTGAATCTTCCGACACTATCGATAACGTCAA 845
Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045
||||| ||||||||||| || ||||| || ||||| |||||
Sbjct 846 GGCCAAGATCCAGGACAAAGAGGGTATCCCGCCAGACCAACAACG 890
>seq20561
Length=8220
Score = 89.7 bits (98), Expect = 1e-12
Identities = 89/113 (79%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCT-CAGACACCATCGAGAACGTCAA 178000
||||| || || || |||||||||||||| | ||||| | ||||| ||||| || || ||
Sbjct 5761 CTCACGGGTAAGACCATCACCCTCGAGGTCG-AAGCTGCCGACACAATCGACAATGTGAA 5819
Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCT 178053
|||||||| || || ||||| || || || ||||| |||||||||||||
Sbjct 5820 GACCAAGATTCAAGAAAAGGAAGGCATTCCACCAGACCAACAACGACTTATCT 5872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203395615164246
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |