Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10 132 6e-26 >seq10 Length=1653987 Score = 132 bits (146), Expect = 6e-26 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||| ||||| |||| | ||| | |||||| || | ||| |||||| || || ||||| Sbjct 1138138 CTACTGTCCGCCTCGGAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTA 1138197 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || ||||| || |||| || |||||||| || ||||| |||||||| |||||||| Sbjct 1138198 GTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTC 1138257 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCG 43128 || || | || |||||||||| ||| | || | | | | | | || |||||| || Sbjct 1138258 GGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTAACATTGTCAATCGTGTCCGACG 1138316 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || | ||| || || ||||| || | ||||| || ||||||||||| Sbjct 1138317 ACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 1138371 Score = 122 bits (134), Expect = 1e-22 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | ||| | || ||||||||| || |||||||| || || || || | Sbjct 915304 CGCAAGACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCAAGCGTACGGCCA 915363 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || || || || ||||| ||||| ||||||| || | | ||||||| Sbjct 915364 TCCTCGAGCTGTTTGCCCGCAAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTG 915423 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| | || | ||||| | | | |||||| || || || |||| ||||| Sbjct 915424 TCC-TGAATCTTGGCTTTGACATTGTCAATCGTGTCCGATGACTCGACCTCGAGGGTGAT 915482 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| |||||||| || ||||| |||||||||||||| Sbjct 915483 GGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGCAT 915518 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||||| || |||| || |||||||| || ||||| Sbjct 1138408 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAA 1138467 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||||||| |||||||||| || | || |||||||||| ||| | || | | | | | Sbjct 1138468 GATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTAACAT 1138526 Query 43112 CGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || |||||| ||| || || || | ||| || || ||||| || | ||||| | Sbjct 1138527 TGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGA 1138586 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 1138587 CGAAGATTTGCAT 1138599 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||||| || |||| || |||||||| || ||||| Sbjct 1138636 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAA 1138695 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||||||| |||||||||| || | || |||||||||| ||| | || | | | | | Sbjct 1138696 GATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTAACAT 1138754 Query 43112 CGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || |||||| ||| || || || | ||| || || ||||| || | ||||| | Sbjct 1138755 TGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGA 1138814 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 1138815 CGAAGATTTGCAT 1138827 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||||| || |||| || |||||||| || ||||| Sbjct 1138864 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAA 1138923 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||||||| |||||||||| || | || |||||||||| ||| | || | | | | | Sbjct 1138924 GATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTAACAT 1138982 Query 43112 CGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || |||||| ||| || || || | ||| || || ||||| || | ||||| | Sbjct 1138983 TGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGA 1139042 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 1139043 CGAAGATTTGCAT 1139055 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||||| || |||| || |||||||| || ||||| Sbjct 1139092 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAA 1139151 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||||||| |||||||||| || | || |||||||||| ||| | || | | | | | Sbjct 1139152 GATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTAACAT 1139210 Query 43112 CGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || |||||| ||| || || || | ||| || || ||||| || | ||||| | Sbjct 1139211 TGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGA 1139270 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 1139271 CGAAGATTTGCAT 1139283 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||||| || |||| || |||||||| || ||||| Sbjct 1139547 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAA 1139606 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||||||| |||||||||| || | || |||||||||| ||| | || | | | | | Sbjct 1139607 GATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTAACAT 1139665 Query 43112 CGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || |||||| ||| || || || | ||| || || ||||| || | ||||| | Sbjct 1139666 TGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGA 1139725 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 1139726 CGAAGATTTGCAT 1139738 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||||| || |||| || |||||||| || ||||| Sbjct 1139775 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAA 1139834 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||||||| |||||||||| || | || |||||||||| ||| | || | | | | | Sbjct 1139835 GATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTAACAT 1139893 Query 43112 CGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || |||||| ||| || || || | ||| || || ||||| || | ||||| | Sbjct 1139894 TGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGA 1139953 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 1139954 CGAAGATTTGCAT 1139966 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||||| || |||| || |||||||| || ||||| Sbjct 1140003 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAA 1140062 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||||||| |||||||||| || | || |||||||||| ||| | || | | | | | Sbjct 1140063 GATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTAACAT 1140121 Query 43112 CGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || |||||| ||| || || || | ||| || || ||||| || | ||||| | Sbjct 1140122 TGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGA 1140181 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 1140182 CGAAGATTTGCAT 1140194 Score = 113 bits (124), Expect = 5e-20 Identities = 143/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||||| || |||| || |||||||| || ||||| Sbjct 1139320 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAA 1139379 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||||||| |||||||||| || | || |||||||||| ||| | || | | | | | Sbjct 1139380 GATGAGTCGTTGCTGGTCGGG-GGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTAACAT 1139437 Query 43112 CGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || |||||| ||| || || || | ||| || || ||||| || | ||||| | Sbjct 1139438 TGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGA 1139497 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 1139498 CGAAGATTTGCAT 1139510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817428454720