Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2 167 5e-36 seq11 105 1e-17 >seq2 Length=936589 Score = 167 bits (184), Expect = 5e-36 Identities = 470/716 (66%), Gaps = 23/716 (3%) Strand=Plus/Plus Query 248758 GTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAG 248817 ||||| || |||||| ||| ||| || ||||| | ||||| | || || | Sbjct 3270 GTCATCATGGCCAACGCCGACCGCCTCAACAGCGCGGTCATCTACGACCGTGACTTTGGC 3329 Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||||| ||||| ||||| ||| || || | || || || |||||| Sbjct 3330 TACAACTACTTTGGCTTCAAGACGCTTGAGCGCTCCTACTTGCTTCGCATCGACGGCAAG 3389 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 | | ||||| || |||||| | ||||| || || ||||| || |||| ||||| Sbjct 3390 GTTGCCGAACGCCCGCAACACATGCTCATGCGTGTCGCCGTCGGCATCCACAGTCATGAC 3449 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || ||| |||| || || |||||| | ||| || |||| | || || ||| | Sbjct 3450 ATCGAGCGCGTCCTGCAGTCGTACAACCTCATGTCCGAGCGCTACTTCACCCACGCCTCG 3509 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG-- 249055 ||||||||||||||||||||||| | || ||||| ||||| | | ||||||| Sbjct 3510 CCGACGCTCTTCAACGCCGGTACGCCCCACCCGCAGCT---CTCGT-CGTGCTTCTTGGT 3565 Query 249056 --CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAA 249110 | ||| | |||||||| |||| ||||| || || ||||| | ||||| ||| Sbjct 3566 CACGATGAAGGACGACTCGATCGAAGGCATCTACGATACGCTCA---AGACGTGCGCGCT 3622 Query 249111 GATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTC 249170 || || || ||| || || ||||| | | || ||||||||| |||| || || Sbjct 3623 CATCTCCAAGACCGCCGGTGGCATCGGCTTGAGCATCCACAACATCCGCGCGACCGGCTC 3682 Query 249171 GTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGA 249230 ||||||| || || || || | | || ||||| ||| | || || || | Sbjct 3683 GTACATCGCCGGGACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGCGTCTACAA 3742 Query 249231 GTCCACCGCCAGGTTCATCAACCA----GGC--CGGGCGCCGAAAGGGGTCGTTCGCCAT 249284 |||||| | | | || |||| ||| | ||||| ||| | || ||||| Sbjct 3743 CAACACCGCACGCTACGTCGACCAAGGTGGCAACAAGCGCC---CCGGGGCTTTTGCCAT 3799 Query 249285 GTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGG 249344 || | || |||||||||||| | || |||||||| ||| | |||||| |||| Sbjct 3800 CTACCTCGAGCCGTGGCACGCCGACGTCTTTGAGTTCCTCGACCTTCGCAAGAACCACGG 3859 Query 249345 CAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCAT 249404 ||| ||| | | || || || ||||||| || || ||| || |||| | ||||| Sbjct 3860 CAAGGAGGAAGTCCGCGCTCGCGATCTCTTCTTCGCGCTCTGGATCCCCGATCTCTTCAT 3919 Query 249405 GCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGG 249460 | || ||| |||||| ||| || ||| | || | | || |||| || |||| Sbjct 3920 GGAGCGTGTCGAGGCCGCCGGTGACTGGCCCCTGTTCTGCCCCGCCGAGGCACCGG 3975 >seq11 Length=1446674 Score = 105 bits (116), Expect = 1e-17 Identities = 127/169 (75%), Gaps = 8/169 (5%) Strand=Plus/Plus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGA- 254069 |||| ||| ||||||| || |||||||||||||| || |||||||| |||||| |||| Sbjct 294206 TGCTCTTCTACGGTCCACCGGGAACAGGCAAGACCTCGACCATCCTCGCGCTGTGCCGAC 294265 Query 254070 -ACCCTGTTGGGCGAGGGGAACA--TGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGAC 254126 || || |||||| | || | || ||||||| | ||||||||||| || ||| Sbjct 294266 AACTCT-TTGGGCCCG---AATTGTTCCGATCGCGCGTGTTGGAGCTGAACGCCTCGGAC 294321 Query 254127 GAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGA 254175 ||||| || | |||||| | |||||||||||| | ||| |||||| Sbjct 294322 GAACGAGGCATCTCGGTCGTCAGGGACAAGATCAAGGCGTTCGCCAAGA 294370 Score = 84.2 bits (92), Expect = 5e-11 Identities = 130/185 (70%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 254195 ACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGA 254254 ||||||| || || ||||| || | ||||| ||||| || || ||||||| || Sbjct 294463 ACCCGGCC--CCACCATTCAAAATCATCATCCTCGACGAAGCCGATTCCATGACCCAAGA 294520 Query 254255 CGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCT 254314 |||||||| ||| | ||||| | ||||| |||| ||| | ||||| |||||||| Sbjct 294521 TGCGCAGTCAGCCTTGCGCCGCATCATGGAAGCGCATTCCAAGATCACGCGCTTTTGCCT 294580 Query 254315 GGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCG 254374 | ||||||||||| || ||||||| || | | || |||| ||||||| || Sbjct 294581 CATTTGCAACTACGTCACGCGCATCATCGAACCCATCACGTCGAGGTGTTCCAAGTTCCG 294640 Query 254375 ATTCA 254379 |||| Sbjct 294641 CTTCA 294645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766069816832