Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07-
16] 24 sequences; 23,461,035 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq2 167 5e-36
seq11 105 1e-17
>seq2
Length=936589
Score = 167 bits (184), Expect = 5e-36
Identities = 470/716 (66%), Gaps = 23/716 (3%)
Strand=Plus/Plus
Query 248758 GTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAG 248817
||||| || |||||| ||| ||| || ||||| | ||||| | || || |
Sbjct 3270 GTCATCATGGCCAACGCCGACCGCCTCAACAGCGCGGTCATCTACGACCGTGACTTTGGC 3329
Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877
||| | | ||||| ||||| ||||| ||| || || | || || || ||||||
Sbjct 3330 TACAACTACTTTGGCTTCAAGACGCTTGAGCGCTCCTACTTGCTTCGCATCGACGGCAAG 3389
Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937
| | ||||| || |||||| | ||||| || || ||||| || |||| |||||
Sbjct 3390 GTTGCCGAACGCCCGCAACACATGCTCATGCGTGTCGCCGTCGGCATCCACAGTCATGAC 3449
Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997
|| ||| |||| || || |||||| | ||| || |||| | || || ||| |
Sbjct 3450 ATCGAGCGCGTCCTGCAGTCGTACAACCTCATGTCCGAGCGCTACTTCACCCACGCCTCG 3509
Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG-- 249055
||||||||||||||||||||||| | || ||||| ||||| | | |||||||
Sbjct 3510 CCGACGCTCTTCAACGCCGGTACGCCCCACCCGCAGCT---CTCGT-CGTGCTTCTTGGT 3565
Query 249056 --CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAA 249110
| ||| | |||||||| |||| ||||| || || ||||| | ||||| |||
Sbjct 3566 CACGATGAAGGACGACTCGATCGAAGGCATCTACGATACGCTCA---AGACGTGCGCGCT 3622
Query 249111 GATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTC 249170
|| || || ||| || || ||||| | | || ||||||||| |||| || ||
Sbjct 3623 CATCTCCAAGACCGCCGGTGGCATCGGCTTGAGCATCCACAACATCCGCGCGACCGGCTC 3682
Query 249171 GTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGA 249230
||||||| || || || || | | || ||||| ||| | || || || |
Sbjct 3683 GTACATCGCCGGGACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGCGTCTACAA 3742
Query 249231 GTCCACCGCCAGGTTCATCAACCA----GGC--CGGGCGCCGAAAGGGGTCGTTCGCCAT 249284
|||||| | | | || |||| ||| | ||||| ||| | || |||||
Sbjct 3743 CAACACCGCACGCTACGTCGACCAAGGTGGCAACAAGCGCC---CCGGGGCTTTTGCCAT 3799
Query 249285 GTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGG 249344
|| | || |||||||||||| | || |||||||| ||| | |||||| ||||
Sbjct 3800 CTACCTCGAGCCGTGGCACGCCGACGTCTTTGAGTTCCTCGACCTTCGCAAGAACCACGG 3859
Query 249345 CAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCAT 249404
||| ||| | | || || || ||||||| || || ||| || |||| | |||||
Sbjct 3860 CAAGGAGGAAGTCCGCGCTCGCGATCTCTTCTTCGCGCTCTGGATCCCCGATCTCTTCAT 3919
Query 249405 GCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGG 249460
| || ||| |||||| ||| || ||| | || | | || |||| || ||||
Sbjct 3920 GGAGCGTGTCGAGGCCGCCGGTGACTGGCCCCTGTTCTGCCCCGCCGAGGCACCGG 3975
>seq11
Length=1446674
Score = 105 bits (116), Expect = 1e-17
Identities = 127/169 (75%), Gaps = 8/169 (5%)
Strand=Plus/Plus
Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGA- 254069
|||| ||| ||||||| || |||||||||||||| || |||||||| |||||| ||||
Sbjct 294206 TGCTCTTCTACGGTCCACCGGGAACAGGCAAGACCTCGACCATCCTCGCGCTGTGCCGAC 294265
Query 254070 -ACCCTGTTGGGCGAGGGGAACA--TGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGAC 254126
|| || |||||| | || | || ||||||| | ||||||||||| || |||
Sbjct 294266 AACTCT-TTGGGCCCG---AATTGTTCCGATCGCGCGTGTTGGAGCTGAACGCCTCGGAC 294321
Query 254127 GAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGA 254175
||||| || | |||||| | |||||||||||| | ||| ||||||
Sbjct 294322 GAACGAGGCATCTCGGTCGTCAGGGACAAGATCAAGGCGTTCGCCAAGA 294370
Score = 84.2 bits (92), Expect = 5e-11
Identities = 130/185 (70%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 254195 ACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGA 254254
||||||| || || ||||| || | ||||| ||||| || || ||||||| ||
Sbjct 294463 ACCCGGCC--CCACCATTCAAAATCATCATCCTCGACGAAGCCGATTCCATGACCCAAGA 294520
Query 254255 CGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCT 254314
|||||||| ||| | ||||| | ||||| |||| ||| | ||||| ||||||||
Sbjct 294521 TGCGCAGTCAGCCTTGCGCCGCATCATGGAAGCGCATTCCAAGATCACGCGCTTTTGCCT 294580
Query 254315 GGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCG 254374
| ||||||||||| || ||||||| || | | || |||| ||||||| ||
Sbjct 294581 CATTTGCAACTACGTCACGCGCATCATCGAACCCATCACGTCGAGGTGTTCCAAGTTCCG 294640
Query 254375 ATTCA 254379
||||
Sbjct 294641 CTTCA 294645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073766069816832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |