Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq10 123 2e-23 seq13 87.8 2e-12 >seq10 Length=1653987 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || |||||||| | ||| | || ||||||| || ||||| || || ||||| || ||| Sbjct 1138142 TGTCCGCCTCGGAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 1138201 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| |||||||||||| || || || |||| || |||||||| ||||| Sbjct 1138202 GCGAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCGGGG 1138261 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| | || | ||| | | || | ||||| | | ||| Sbjct 1138262 GGAATGCCCTCCTTGTC-CTGAATCTTGGCCTTAACATTGTCAATCGTGTCCGACGACTC 1138320 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || |||| || | ||||||||||||||| || || ||||| ||||||||| Sbjct 1138321 GACTTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATA 1138372 Score = 105 bits (116), Expect = 7e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| ||||| || || ||||| || ||| | |||| |||||||||||| || || Sbjct 1138402 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCC 1138461 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| || |||||||| ||||| || ||||| || ||||| ||| | || | | Sbjct 1138462 GGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCCT 1138520 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || | ||||| | | ||| || |||| || | ||||||||||||||| | Sbjct 1138521 TAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGG 1138580 Query 139746 TTTTTACGAATATTTGCATA 139765 | || ||||| ||||||||| Sbjct 1138581 TCTTGACGAAGATTTGCATA 1138600 Score = 105 bits (116), Expect = 7e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| ||||| || || ||||| || ||| | |||| |||||||||||| || || Sbjct 1138630 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCC 1138689 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| || |||||||| ||||| || ||||| || ||||| ||| | || | | Sbjct 1138690 GGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCCT 1138748 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || | ||||| | | ||| || |||| || | ||||||||||||||| | Sbjct 1138749 TAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGG 1138808 Query 139746 TTTTTACGAATATTTGCATA 139765 | || ||||| ||||||||| Sbjct 1138809 TCTTGACGAAGATTTGCATA 1138828 Score = 105 bits (116), Expect = 7e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| ||||| || || ||||| || ||| | |||| |||||||||||| || || Sbjct 1138858 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCC 1138917 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| || |||||||| ||||| || ||||| || ||||| ||| | || | | Sbjct 1138918 GGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCCT 1138976 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || | ||||| | | ||| || |||| || | ||||||||||||||| | Sbjct 1138977 TAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGG 1139036 Query 139746 TTTTTACGAATATTTGCATA 139765 | || ||||| ||||||||| Sbjct 1139037 TCTTGACGAAGATTTGCATA 1139056 Score = 105 bits (116), Expect = 7e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| ||||| || || ||||| || ||| | |||| |||||||||||| || || Sbjct 1139086 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCC 1139145 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| || |||||||| ||||| || ||||| || ||||| ||| | || | | Sbjct 1139146 GGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCCT 1139204 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || | ||||| | | ||| || |||| || | ||||||||||||||| | Sbjct 1139205 TAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGG 1139264 Query 139746 TTTTTACGAATATTTGCATA 139765 | || ||||| ||||||||| Sbjct 1139265 TCTTGACGAAGATTTGCATA 1139284 Score = 105 bits (116), Expect = 7e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| ||||| || || ||||| || ||| | |||| |||||||||||| || || Sbjct 1139541 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCC 1139600 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| || |||||||| ||||| || ||||| || ||||| ||| | || | | Sbjct 1139601 GGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCCT 1139659 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || | ||||| | | ||| || |||| || | ||||||||||||||| | Sbjct 1139660 TAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGG 1139719 Query 139746 TTTTTACGAATATTTGCATA 139765 | || ||||| ||||||||| Sbjct 1139720 TCTTGACGAAGATTTGCATA 1139739 Score = 105 bits (116), Expect = 7e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| ||||| || || ||||| || ||| | |||| |||||||||||| || || Sbjct 1139769 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCC 1139828 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| || |||||||| ||||| || ||||| || ||||| ||| | || | | Sbjct 1139829 GGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCCT 1139887 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || | ||||| | | ||| || |||| || | ||||||||||||||| | Sbjct 1139888 TAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGG 1139947 Query 139746 TTTTTACGAATATTTGCATA 139765 | || ||||| ||||||||| Sbjct 1139948 TCTTGACGAAGATTTGCATA 1139967 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| ||||| || || ||||| || ||| | |||| |||||||||||| || || Sbjct 1139997 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCC 1140056 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| || |||||||| ||||| || ||||| || ||||| ||| | || | | Sbjct 1140057 GGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCCT 1140115 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || | ||||| | | ||| || |||| || | ||||||||||||||| | Sbjct 1140116 TAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGG 1140175 Query 139746 TTTTTACGAATATTTGCAT 139764 | || ||||| |||||||| Sbjct 1140176 TCTTGACGAAGATTTGCAT 1140194 Score = 102 bits (112), Expect = 8e-17 Identities = 145/200 (73%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| ||||| || || ||||| || ||| | |||| |||||||||||| || || Sbjct 1139314 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCGTCTTCGAGCTGCTTGCC 1139373 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| || |||||||| ||||| || ||||| || ||||| ||| | || | | Sbjct 1139374 GGCGAAGATGAGTCGTTGCTGGTCGGG-GGAATGCCCTCCTTGTCC-TGAATCTTGGCCT 1139431 Query 139687 TAGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || | ||||| | | ||| || |||| || | ||||||||||||||| | Sbjct 1139432 TAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATCGTCTTGCCGGTCAAGG 1139491 Query 139746 TTTTTACGAATATTTGCATA 139765 | || ||||| ||||||||| Sbjct 1139492 TCTTGACGAAGATTTGCATA 1139511 >seq13 Length=1203898 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || |||||||| | ||| | || ||||||| || ||||| || || ||||| || ||| Sbjct 755882 TGTCCGCCTCGGAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 755823 Query 139595 -CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 ||| |||| ||||||||||| || || || |||| || |||||||| || || Sbjct 755822 GCTCGG-GTGCGACCATCTTCGAGCTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCTGG 755764 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 || ||||| || ||||| ||| | || | || | | || | ||||| | | || Sbjct 755763 GGGAATGCCCTCCTTGTC-CTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACT 755705 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | || |||| || | ||||||||||||||| || Sbjct 755704 CGACTTCAAGCGTAATCGTCTTGCCGGTCAAGGT 755671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063851180800