Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq10 114 1e-20 seq13 84.2 2e-11 >seq10 Length=1653987 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || ||||| | ||| | || || |||| || || || || || |||||||| ||| Sbjct 1138142 TGTCCGCCTCGGAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 1138201 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | |||| ||||||||| || || || || |||| || |||||||| ||||| Sbjct 1138202 GCGAGAGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCGGGG 1138261 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || ||||| || ||||| ||| || || | | || | |||||||| | || Sbjct 1138262 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTAACATTGTCAATCGTGTCCGACGACTCG 1138321 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||||| || | ||||||||||||||| || || ||||| ||||||||| Sbjct 1138322 ACTTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATA 1138372 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || || || || || |||||||| ||| | |||| | Sbjct 1138385 CGCAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCG 1138444 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| || || || || |||| || |||||||| ||||| || ||||| || ||| Sbjct 1138445 TCTTCGAGCTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTG 1138504 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || || | | || | |||||||| | || ||||||| || | | Sbjct 1138505 TCCTGAATCTTGGCCTTAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATC 1138564 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||||||||| || || ||||| ||||||||| Sbjct 1138565 GTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATA 1138600 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || || || || || |||||||| ||| | |||| | Sbjct 1138613 CGCAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCG 1138672 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| || || || || |||| || |||||||| ||||| || ||||| || ||| Sbjct 1138673 TCTTCGAGCTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTG 1138732 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || || | | || | |||||||| | || ||||||| || | | Sbjct 1138733 TCCTGAATCTTGGCCTTAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATC 1138792 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||||||||| || || ||||| ||||||||| Sbjct 1138793 GTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATA 1138828 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || || || || || |||||||| ||| | |||| | Sbjct 1138841 CGCAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCG 1138900 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| || || || || |||| || |||||||| ||||| || ||||| || ||| Sbjct 1138901 TCTTCGAGCTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTG 1138960 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || || | | || | |||||||| | || ||||||| || | | Sbjct 1138961 TCCTGAATCTTGGCCTTAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATC 1139020 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||||||||| || || ||||| ||||||||| Sbjct 1139021 GTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATA 1139056 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || || || || || |||||||| ||| | |||| | Sbjct 1139069 CGCAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCG 1139128 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| || || || || |||| || |||||||| ||||| || ||||| || ||| Sbjct 1139129 TCTTCGAGCTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTG 1139188 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || || | | || | |||||||| | || ||||||| || | | Sbjct 1139189 TCCTGAATCTTGGCCTTAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATC 1139248 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||||||||| || || ||||| ||||||||| Sbjct 1139249 GTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATA 1139284 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || || || || || |||||||| ||| | |||| | Sbjct 1139524 CGCAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCG 1139583 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| || || || || |||| || |||||||| ||||| || ||||| || ||| Sbjct 1139584 TCTTCGAGCTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTG 1139643 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || || | | || | |||||||| | || ||||||| || | | Sbjct 1139644 TCCTGAATCTTGGCCTTAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATC 1139703 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||||||||| || || ||||| ||||||||| Sbjct 1139704 GTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATA 1139739 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || || || || || |||||||| ||| | |||| | Sbjct 1139752 CGCAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCG 1139811 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| || || || || |||| || |||||||| ||||| || ||||| || ||| Sbjct 1139812 TCTTCGAGCTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTG 1139871 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || || | | || | |||||||| | || ||||||| || | | Sbjct 1139872 TCCTGAATCTTGGCCTTAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATC 1139931 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||||||||| || || ||||| ||||||||| Sbjct 1139932 GTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATA 1139967 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || || || || || |||||||| ||| | |||| | Sbjct 1139980 CGCAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCG 1140039 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| || || || || |||| || |||||||| ||||| || ||||| || ||| Sbjct 1140040 TCTTCGAGCTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCGGGGGGAATGCCCTCCTTG 1140099 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || || | | || | |||||||| | || ||||||| || | | Sbjct 1140100 TCCTGAATCTTGGCCTTAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATC 1140159 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||||||||| || || ||||| |||||||| Sbjct 1140160 GTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 1140194 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 ||||| || | ||||| || || || ||||| ||||||||||| | || | Sbjct 915076 CGCAAGACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCAAGCGTACGGCCA 915135 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || ||||| || || ||||| |||||| || |||||||| ||||| |||||||| ||| Sbjct 915136 TCCTCGAGCTGCTTTCCAGCGAAGATCAATCGCTGCTGATCAGGAGGGATGCCTTCCTTG 915195 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || || | | || | |||||||| || ||| || || | || | | Sbjct 915196 TCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGATTCGACCTCGAGCGTGATC 915255 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| |||||||| || || || || || |||||| Sbjct 915256 GTCTTACCGGTCAAGGTCTTGACAAAGATCTGCATA 915291 Score = 102 bits (112), Expect = 8e-17 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || || || || || |||||||| ||| | |||| | Sbjct 1139297 CGCAGGACGAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGACCG 1139356 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| || || || || |||| || |||||||| ||||| || ||||| || ||| Sbjct 1139357 TCTTCGAGCTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCGGG-GGAATGCCCTCCTTG 1139415 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || || | | || | |||||||| | || ||||||| || | | Sbjct 1139416 TCCTGAATCTTGGCCTTAACATTGTCAATCGTGTCCGACGACTCGACTTCAAGCGTAATC 1139475 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||||||||| || || ||||| ||||||||| Sbjct 1139476 GTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATA 1139511 >seq13 Length=1203898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || ||||| | ||| | || || |||| || || || || || |||||||| ||| Sbjct 755882 TGTCCGCCTCGGAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 755823 Query 143015 -CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 ||| |||| |||||||| || || || || |||| || |||||||| || || Sbjct 755822 GCTCGG-GTGCGACCATCTTCGAGCTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCTGG 755764 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 || ||||| || ||||| ||| || || | | || | |||||||| | || Sbjct 755763 GGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACTC 755704 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 ||||||| || | ||||||||||||||| || Sbjct 755703 GACTTCAAGCGTAATCGTCTTGCCGGTCAAGGT 755671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014247895680