Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07-
16] 24 sequences; 23,461,035 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1 172 9e-39
seq7 158 2e-34
seq6 158 2e-34
>seq1
Length=554179
Score = 172 bits (190), Expect = 9e-39
Identities = 158/200 (79%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| |||||||| ||||| || |||||||||||
Sbjct 175306 CGCGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCACGTCGTGGTGGT 175365
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || | |||| || |||| || | ||||||||||||||||||
Sbjct 175366 GTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACGCGAGGCGTTTTGAAGATCTTCCTC 175425
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||||||||| || || ||||| ||||||
Sbjct 175426 GAGAACGTCATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 175485
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 175486 TCGCTCGATGTCGTCTACGC 175505
Score = 172 bits (190), Expect = 9e-39
Identities = 158/200 (79%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| |||||||| ||||| || |||||||||||
Sbjct 260086 CGCGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCACGTCGTGGTGGT 260027
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || | |||| || |||| || | ||||||||||||||||||
Sbjct 260026 GTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACGCGAGGCGTTTTGAAGATCTTCCTC 259967
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||||||||| || || ||||| ||||||
Sbjct 259966 GAGAACGTCATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 259907
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 259906 TCGCTCGATGTCGTCTACGC 259887
>seq7
Length=2982376
Score = 158 bits (174), Expect = 2e-34
Identities = 155/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
||||| |||||||| || || ||||| || || ||||| ||||| || |||||||||||
Sbjct 1027628 CGAGACAACATCCAGGGCATTACCAAACCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 1027569
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || | |||| || |||| || | ||| ||||||||||||||
Sbjct 1027568 GTCAAGCGTATCTCCGGTCTCATCTACGAGGAGACGCGAGGTGTCTTGAAGATCTTCCTT 1027509
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||||||||| ||||| || || ||||| ||||||
Sbjct 1027508 GAGAACGTCATCCGTGACTCGGTCACCTATACCGAACACGCCAAGCGCAAGACCGTCACC 1027449
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 1027448 TCGCTCGATGTCGTCTACGC 1027429
Score = 158 bits (174), Expect = 2e-34
Identities = 155/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
||||| |||||||| || || ||||| || || ||||| ||||| || |||||||||||
Sbjct 1075058 CGAGACAACATCCAGGGCATTACCAAACCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 1075117
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || | |||| || |||| || | ||| ||||||||||||||
Sbjct 1075118 GTCAAGCGTATCTCCGGTCTCATCTACGAGGAGACGCGAGGTGTCTTGAAGATCTTCCTT 1075177
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||||||||| ||||| || || ||||| ||||||
Sbjct 1075178 GAGAACGTCATCCGTGACTCGGTCACCTATACCGAACACGCCAAGCGCAAGACCGTCACC 1075237
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 1075238 TCGCTCGATGTCGTCTACGC 1075257
>seq6
Length=2534666
Score = 158 bits (174), Expect = 2e-34
Identities = 155/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || ||||| || || ||||||||||| |||||||| ||||| || |||||||||||
Sbjct 2293510 CGCGACAACATTCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCACGTCGTGGTGGT 2293451
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || | |||| || |||| || | || ||||| |||||||||
Sbjct 2293450 GTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACCCGAGGCGTCTTGAAAATCTTCCTC 2293391
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||||||||| || || ||||| ||||||
Sbjct 2293390 GAGAACGTCATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 2293331
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 2293330 TCGCTCGATGTCGTCTACGC 2293311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075178056632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |