Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07-
16] 24 sequences; 23,461,035 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq6 120 6e-22
seq12 105 1e-17
>seq6
Length=2534666
Score = 120 bits (132), Expect = 6e-22
Identities = 679/1078 (63%), Gaps = 31/1078 (3%)
Strand=Plus/Plus
Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896
||||| |||||| |||| || ||||| || || |||| || | | ||||| ||
Sbjct 1950697 TGCACGCTCATCTTGACTGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGTCC 1950756
Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956
|| || ||||| || | |||||| | ||||| || || || ||| ||||||||||||||
Sbjct 1950757 GTCGTCGGTCGAGACAACTATGGTGTTTTCCCTCTGCGAGGGAAGTTGCTCAACGTGCGC 1950816
Query 217957 GATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCC 218014
|| ||| ||| ||| || ||||| | ||||| ||||| || |||||||||||
Sbjct 1950817 GAAGCCGCGG--GCAAGGCGTTGCTCGACAATGCTGAGATCCAAGCGATCAAGCAAATTT 1950874
Query 218015 TGGGTCTTCAGGTTGGAAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCTGTC 218073
||||||| ||| || ||| |||| || | || | || || ||||||||| ||
Sbjct 1950875 TGGGTCTGCAGCAGGGCAAGGTGTACACCGACGTCGAC-TCGCTCCGTTATGGCAAGCTC 1950933
Query 218074 ATGCTTATGACTGATGCTGATGTTGACGGGTCCCACATTTCCGCCCTCGTTATGAACTTC 218133
||| | ||| | ||| ||| || || || ||||| | || | || ||||||
Sbjct 1950934 ATGATCATGGCCGATCAGGATCACGATGGATCTCACATCAAGGGTCTAATCATCAACTTC 1950993
Query 218134 TTCCACGCCCAGTTCCCCAGCCTCCTCGCCGTCCCAGGGTTCCTGAAGAAGTTTTCCACT 218193
|| | | ||||||| | ||| | | || ||| | |||| |||
Sbjct 1950994 CTCGATTACTGGTTCCCCTCATTGCTCAAGCTGCGCGGCTTCTTACTTGAGTTCATCACC 1951053
Query 218194 CCCATCGTGGTGGCAAGTCGTGGTAAGGATATCAATGAG------TTTTACAGTCTTCCT 218247
|| ||||| |||| || |||| | ||| ||| || | || |||||
Sbjct 1951054 CCGATCGT-----CAAGGCG-AACAAGGGGAACAAGGAGTTGTCCTTCTTCACAATTCCT 1951107
Query 218248 GACTATGAGAGTTGGAAGCAGAACACTGCCGACTGTGCCAAATGGTCTATCAAGTATTTC 218307
| || ||| |||||| | | || ||| || | |||| |||||||| |||
Sbjct 1951108 CAGTACGAGCAGTGGAAGGAAGAGACCAATGACGGTCGCGGATGGCGCATCAAGTACTTC 1951167
Query 218308 AAGGGTCTCGGAACAAGCACATCCGAAGATGCCAAGAAGTACTTCAAGAACCT---CAAG 218364
||||| | || || || || || |||||||||||||| ||| | ||||
Sbjct 1951168 AAGGGATTGGGTACGAGTGATGCCAGGGACGCCAAGAAGTACTTTGGAAACATGGACAAG 1951227
Query 218365 --TCGCT---CGTGAAGATCTTTGGGTGGACCGAAGACTCTGGCGAGCTCATCGACCGAT 218419
||| | ||| || || | ||| | || |||| | ||||||
Sbjct 1951228 CATCGATTGCCGTTCAGGCCT-----TCGACGCAGGAAGAGCGCGAATTGATCGACATGG 1951282
Query 218420 CTTTCAACAAGTCTCGTCCTGATGAGCGCAAGACCTGGCTGCTCGACTTCCAGCCCGGAA 218479
| ||||||||| | || | |||||| ||||||| | |||| ||||| |
Sbjct 1951283 CCTTCAACAAGAAGAAGGCCGACAACCGCAAGGAATGGCTGCGTGGCTTCGTCCCCGGCA 1951342
Query 218480 ACCAGTTGGACCAGTCGAAGACCAACATCCCCGTCCCTGACTTCATCGACAAGGAGCTCA 218539
| | ||||| | || | |||| || ||||||||| |||||||| | |
Sbjct 1951343 CGTACCTCGACCATAGCATTTCCGAAGTCCCGATCGAGGACTTCATCAACAAGGAGTTGA 1951402
Query 218540 TTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGC 218599
| || |||||| | || | ||| || || || || | ||||| |||| |
Sbjct 1951403 TCCTCTTCTCGATGGCCGACAACGTGCGCTCGATCCCTTCGGTCATTGATGGGTTCAAAC 1951462
Query 218600 CATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGG 218659
| || || ||| || | || | |||||||| || || || ||||| ||||
Sbjct 1951463 CGGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGTAAGCTTACGCAGGAAATCAAGG 1951522
Query 218660 TCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTC 218719
||| || || | || || || |||| || | |||||||||||||| ||||
Sbjct 1951523 TCGGACAACTTGCCGGCTACGTCGCCGAGCACTCGGCGTACCATCACGGTGACTTGAGTT 1951582
Query 218720 TGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGC 218779
|||| || ||||| | ||| |||| || | | || || |||||| | || | |
Sbjct 1951583 TGCAAGGCACCATTATTGGCTTGGCGCAACAGTTCGTTGGATCCAACAACCTCAATATCC 1951642
Query 218780 TGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCA 218839
| |||||||||||| || ||| | ||| | ||||| ||||| ||| || ||
Sbjct 1951643 TTGACCCCAACGGTCAATTCGGTACGCGTTTGCAAGGTGGTAAGGACGCTGCCTCGGCTC 1951702
Query 218840 GGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGA 218897
| || ||||| || || ||||| || | || ||| || ||| ||| ||||||||
Sbjct 1951703 GTTACATCTTCACGAACGTGTCGGCCATCACTCGCAGCGTCTTCCATCCCGCCGATGA 1951760
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| || ||||||||||| ||| |||| ||||||||||
Sbjct 2079835 GCCCGGTTAGCTCAGTCGGTAGAGCACTTGACTCTTAATCAAGTTGTCGCGGGTTCGAGC 2079894
Query 142564 CCCACATCGGGC 142575
||| ||| ||||
Sbjct 2079895 CCCGCATTGGGC 2079906
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||| ||||| || ||||||||||| ||| |||| ||||||||||
Sbjct 2089961 GCCCGGTTAGCTCAGTCGGCAGAGCACTTGACTCTTAATCAAGTTGTCGCGGGTTCGAGC 2089902
Query 142564 CCCACATCGGGC 142575
||| ||| ||||
Sbjct 2089901 CCCGCATTGGGC 2089890
>seq12
Length=1963039
Score = 105 bits (116), Expect = 1e-17
Identities = 140/194 (72%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227
||||| || | || ||||| ||||| ||||| || ||| | ||||| || |||| ||||
Sbjct 1837589 TTGGTATCGTCGGCCCCAACGGTGCCGGTAAATCGACCTTGATCAAGCTCTTGACGGGCG 1837648
Query 280228 AGACC----CAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283
||||| ||| | | | |||| |||||| |||||| |||| | || ||
Sbjct 1837649 AGACCGTTCCAGACGAAGGCAAGGTCGA----GAAGCACCCCAACTTGCGCGTTGCGTAT 1837704
Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343
||||| || ||||| ||||||||||||||| | ||||| || | ||| | | || |||
Sbjct 1837705 GTCGCCCAACACGCGTTCCACCACATCGAGGAGCACCTCGAGAAGACGGCGATGCAGTAC 1837764
Query 280344 ATTCAGTGGCGCTA 280357
|| |||||||| ||
Sbjct 1837765 ATCCAGTGGCGTTA 1837778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836483940184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |