Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 120 6e-22 seq12 105 1e-17 >seq6 Length=2534666 Score = 120 bits (132), Expect = 6e-22 Identities = 679/1078 (63%), Gaps = 31/1078 (3%) Strand=Plus/Plus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| |||||| |||| || ||||| || || |||| || | | ||||| || Sbjct 1950697 TGCACGCTCATCTTGACTGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGTCC 1950756 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | |||||| | ||||| || || || ||| |||||||||||||| Sbjct 1950757 GTCGTCGGTCGAGACAACTATGGTGTTTTCCCTCTGCGAGGGAAGTTGCTCAACGTGCGC 1950816 Query 217957 GATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCC 218014 || ||| ||| ||| || ||||| | ||||| ||||| || ||||||||||| Sbjct 1950817 GAAGCCGCGG--GCAAGGCGTTGCTCGACAATGCTGAGATCCAAGCGATCAAGCAAATTT 1950874 Query 218015 TGGGTCTTCAGGTTGGAAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCTGTC 218073 ||||||| ||| || ||| |||| || | || | || || ||||||||| || Sbjct 1950875 TGGGTCTGCAGCAGGGCAAGGTGTACACCGACGTCGAC-TCGCTCCGTTATGGCAAGCTC 1950933 Query 218074 ATGCTTATGACTGATGCTGATGTTGACGGGTCCCACATTTCCGCCCTCGTTATGAACTTC 218133 ||| | ||| | ||| ||| || || || ||||| | || | || |||||| Sbjct 1950934 ATGATCATGGCCGATCAGGATCACGATGGATCTCACATCAAGGGTCTAATCATCAACTTC 1950993 Query 218134 TTCCACGCCCAGTTCCCCAGCCTCCTCGCCGTCCCAGGGTTCCTGAAGAAGTTTTCCACT 218193 || | | ||||||| | ||| | | || ||| | |||| ||| Sbjct 1950994 CTCGATTACTGGTTCCCCTCATTGCTCAAGCTGCGCGGCTTCTTACTTGAGTTCATCACC 1951053 Query 218194 CCCATCGTGGTGGCAAGTCGTGGTAAGGATATCAATGAG------TTTTACAGTCTTCCT 218247 || ||||| |||| || |||| | ||| ||| || | || ||||| Sbjct 1951054 CCGATCGT-----CAAGGCG-AACAAGGGGAACAAGGAGTTGTCCTTCTTCACAATTCCT 1951107 Query 218248 GACTATGAGAGTTGGAAGCAGAACACTGCCGACTGTGCCAAATGGTCTATCAAGTATTTC 218307 | || ||| |||||| | | || ||| || | |||| |||||||| ||| Sbjct 1951108 CAGTACGAGCAGTGGAAGGAAGAGACCAATGACGGTCGCGGATGGCGCATCAAGTACTTC 1951167 Query 218308 AAGGGTCTCGGAACAAGCACATCCGAAGATGCCAAGAAGTACTTCAAGAACCT---CAAG 218364 ||||| | || || || || || |||||||||||||| ||| | |||| Sbjct 1951168 AAGGGATTGGGTACGAGTGATGCCAGGGACGCCAAGAAGTACTTTGGAAACATGGACAAG 1951227 Query 218365 --TCGCT---CGTGAAGATCTTTGGGTGGACCGAAGACTCTGGCGAGCTCATCGACCGAT 218419 ||| | ||| || || | ||| | || |||| | |||||| Sbjct 1951228 CATCGATTGCCGTTCAGGCCT-----TCGACGCAGGAAGAGCGCGAATTGATCGACATGG 1951282 Query 218420 CTTTCAACAAGTCTCGTCCTGATGAGCGCAAGACCTGGCTGCTCGACTTCCAGCCCGGAA 218479 | ||||||||| | || | |||||| ||||||| | |||| ||||| | Sbjct 1951283 CCTTCAACAAGAAGAAGGCCGACAACCGCAAGGAATGGCTGCGTGGCTTCGTCCCCGGCA 1951342 Query 218480 ACCAGTTGGACCAGTCGAAGACCAACATCCCCGTCCCTGACTTCATCGACAAGGAGCTCA 218539 | | ||||| | || | |||| || ||||||||| |||||||| | | Sbjct 1951343 CGTACCTCGACCATAGCATTTCCGAAGTCCCGATCGAGGACTTCATCAACAAGGAGTTGA 1951402 Query 218540 TTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGC 218599 | || |||||| | || | ||| || || || || | ||||| |||| | Sbjct 1951403 TCCTCTTCTCGATGGCCGACAACGTGCGCTCGATCCCTTCGGTCATTGATGGGTTCAAAC 1951462 Query 218600 CATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGG 218659 | || || ||| || | || | |||||||| || || || ||||| |||| Sbjct 1951463 CGGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGTAAGCTTACGCAGGAAATCAAGG 1951522 Query 218660 TCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTC 218719 ||| || || | || || || |||| || | |||||||||||||| |||| Sbjct 1951523 TCGGACAACTTGCCGGCTACGTCGCCGAGCACTCGGCGTACCATCACGGTGACTTGAGTT 1951582 Query 218720 TGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGC 218779 |||| || ||||| | ||| |||| || | | || || |||||| | || | | Sbjct 1951583 TGCAAGGCACCATTATTGGCTTGGCGCAACAGTTCGTTGGATCCAACAACCTCAATATCC 1951642 Query 218780 TGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCA 218839 | |||||||||||| || ||| | ||| | ||||| ||||| ||| || || Sbjct 1951643 TTGACCCCAACGGTCAATTCGGTACGCGTTTGCAAGGTGGTAAGGACGCTGCCTCGGCTC 1951702 Query 218840 GGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGA 218897 | || ||||| || || ||||| || | || ||| || ||| ||| |||||||| Sbjct 1951703 GTTACATCTTCACGAACGTGTCGGCCATCACTCGCAGCGTCTTCCATCCCGCCGATGA 1951760 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| || ||||||||||| ||| |||| |||||||||| Sbjct 2079835 GCCCGGTTAGCTCAGTCGGTAGAGCACTTGACTCTTAATCAAGTTGTCGCGGGTTCGAGC 2079894 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 2079895 CCCGCATTGGGC 2079906 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||| ||||| || ||||||||||| ||| |||| |||||||||| Sbjct 2089961 GCCCGGTTAGCTCAGTCGGCAGAGCACTTGACTCTTAATCAAGTTGTCGCGGGTTCGAGC 2089902 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 2089901 CCCGCATTGGGC 2089890 >seq12 Length=1963039 Score = 105 bits (116), Expect = 1e-17 Identities = 140/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227 ||||| || | || ||||| ||||| ||||| || ||| | ||||| || |||| |||| Sbjct 1837589 TTGGTATCGTCGGCCCCAACGGTGCCGGTAAATCGACCTTGATCAAGCTCTTGACGGGCG 1837648 Query 280228 AGACC----CAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283 ||||| ||| | | | |||| |||||| |||||| |||| | || || Sbjct 1837649 AGACCGTTCCAGACGAAGGCAAGGTCGA----GAAGCACCCCAACTTGCGCGTTGCGTAT 1837704 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 ||||| || ||||| ||||||||||||||| | ||||| || | ||| | | || ||| Sbjct 1837705 GTCGCCCAACACGCGTTCCACCACATCGAGGAGCACCTCGAGAAGACGGCGATGCAGTAC 1837764 Query 280344 ATTCAGTGGCGCTA 280357 || |||||||| || Sbjct 1837765 ATCCAGTGGCGTTA 1837778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836483940184