Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 360 4e-94 seq6 84.2 4e-11 >seq2 Length=936589 Score = 360 bits (398), Expect = 4e-94 Identities = 869/1299 (67%), Gaps = 40/1299 (3%) Strand=Plus/Minus Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 |||| || |||| ||||||||||||||||||| |||||| | | ||| |||| | Sbjct 4522 TCGATCGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTTGCGAGCCTCGGGC 4463 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 || ||| || || ||| |||||| ||||||||| || ||||| ||||||||| Sbjct 4462 GAGTCGAACGGCATCGCCAAGGCCATGAACGCGTCGGCCAACCCTTGCACTCCGATGCCG 4403 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 ||||| | ||| || ||||||| || ||| |||||||| ||||| ||||| Sbjct 4402 ATGGGACGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGGTAGTAGTTGACGTCG 4343 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 || | ||| | |||| | || | | |||| ||| |||| || ||||| Sbjct 4342 ATGATGCGGTTCAAGTTGAACGCGACGACCTTGGCGACCTCGTGCAGCTTCTTGAAGTCA 4283 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 ||| || | | || || ||| ||| ||| || | ||| |||| Sbjct 4282 TACACGCCG---TTCT------TGATGAAGCTCGGCAACGCGAT-----CGA----GGCC 4241 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 | |||||| ||||| ||| || | | | ||||| || ||||||||||| | ||| Sbjct 4240 AAGTTGCAAACGGCGCACTCGTCGGGGGCCGAGTACTCGATGATCTCGGTGCACAAGTTG 4181 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 ||||||||||||| || | || || || ||||| ||| ||||||||||||| Sbjct 4180 GACGACTTGATGGTGCCGAGATTCTTCTGGTTCGACTTCTTGTTCGCGGCGTCCTTGTAG 4121 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCT 244869 ||||||||||| |||||||||| |||||| |||||| ||| || ||| || | Sbjct 4120 AGCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGGATCGC-GTACCAAAGCTTTTG 4062 Query 244870 AGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAA 244929 || || |||| | || |||||| |||||| ||| | | ||| Sbjct 4061 CGCGGGGATCGTCTTCTTGGCTCGGCCCTCCTTCTCGTACTTTTCAAACAAGACGCGGAA 4002 Query 244930 CTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTC 244989 ||| ||| ||||||||| || || || | || ||||| | || ||| || Sbjct 4001 CTCCTCGCCATAGACCTCGTGGAGACCCGGTGCCTCGGCGGGGCAGAACAGGGGCCAGTC 3942 Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 ||| || ||| ||| | || ||||||||| |||||||||||||| || |||||| || Sbjct 3941 ACCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGGATCCAGAGCGCGAAGAAGAGATC 3882 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | | | || ||| ||| |||||| | || || | || ||||||||||| Sbjct 3881 GCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAACTCAAAGACGTC 3822 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 | ||||||| ||||| | ||||| || | || ||||| ||||||||||| || ||||| Sbjct 3821 GGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCCCCGGGGCGCTTGTTGCCACCTTGGTC 3762 Query 245170 CACCATCCTCTCGAGCGC----GTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225 || | || ||| |||| ||| ||| || | || || |||||||| |||| Sbjct 3761 GACG----TAGCGTGCGGTGTTGTTGTAGACGCGGAGCATGGGGACGATGCCGTTCGAGT 3706 Query 245226 GGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTA 245285 |||||| || || |||||| | ||| | | | || |||| |||| || ||| | Sbjct 3705 AGCCGTTCGTCCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAGCCGA 3646 Query 245286 GTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCA 245345 || |||||| |||||||||||| ||||| |||||| || || ||||| || | Sbjct 3645 TGCCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTATCGTAGATGCCTTCGA 3586 Query 245346 TGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACG 245405 | ||| |||||| ||| || ||||| || || ||||| || | ||| | | | Sbjct 3585 TCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGGGGCGTACCGG 3526 Query 245406 AGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTC 245464 |||||| || || || ||||||||| ||||||| |||| || | || ||||| | Sbjct 3525 CGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGC-GCTCGGACATGAGGTTGTACGAC 3467 Query 245465 TGGAGCA-GAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTG 245523 || || | | || ||||||| | | |||||| | |||| | |||||| |||| Sbjct 3466 TGCAGGACGCGC-TCGATGTCATGACTGTGGATGCCGACGGCGACACGCATGAGCATGTG 3408 Query 245524 CTG-GGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGAGCGT 245580 || |||||| ||| | || | ||| | |||| |||||||||||| ||||| Sbjct 3407 TTGCGGGCGT-TCG--GCAACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCAAGCGT 3351 Query 245581 CTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCT 245640 |||||| |||||||| |||||||||||| || || |||| || || ||| | Sbjct 3350 CTTGAAGCCAAAGTAGTTGTAGCCAAAGTCACGGTCGTAGATGACCGCGCTGTTGAGGCG 3291 Query 245641 CTCGGCG-TGCTTCTGACTGACCTCGTAAAACTTTTGCG 245678 |||||| || ||| |||||||||| || ||||| Sbjct 3290 GTCGGCGTTGGCCATGA-TGACCTCGTACGTCTCTTGCG 3253 Score = 154 bits (170), Expect = 3e-32 Identities = 192/260 (74%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTC 42803 ||| | ||||| |||||||||||||||||| || | | |||||||||| | |||||| Sbjct 55400 GGCTCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGAGGCTTGATGCCCGGATTGACCTTC 55341 Query 42804 TCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || ||||| |||||| | |||||||| || || | ||||||||||||||||||||| Sbjct 55340 TCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTGTTC 55281 Query 42864 TCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGCGGGTCCGGGCCATCATCACGGAGGC 42922 || ||||||| || ||| |||| || ||| |||||||| |||||| Sbjct 55280 TC---CCACCTCGAGC-GAAGACCTCACCCCGACACCGTCGCCCTCATCATCAAGGAGGC 55225 Query 42923 CGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA 42982 ||| |||||||||||||||||| | || || | || ||| || |||||||||| Sbjct 55224 CGTCGAGATCGAGAAGGAGTTCTTGACCGAGGCTCTTCCCTGCGGTTTGATCGGCATGAA 55165 Query 42983 CCACGACCTCATGTGCAAGT 43002 | | | ||||||||| ||| Sbjct 55164 CGCCAAGCTCATGTGCCAGT 55145 >seq6 Length=2534666 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 42737 CTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGAC 42795 || ||| || ||||||||||||||||||||||||| | |||| || |||||||||| Sbjct 1721696 CTCCTCAGGTTCCTTCGCCTCCATCTTCTGGCTCAAAAAACGAGGTCTC-ATGCCCGGAC 1721638 Query 42796 TCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCC 42855 | |||||| ||||||||||| | | ||||| || || |||| || || ||| || Sbjct 1721637 TGTGCTTCTCCAACGAACTCATATCCCGCGACGAAGGCCTTCATACCGAATTCGCCGTCC 1721578 Query 42856 TCCTGTTC 42863 | || ||| Sbjct 1721577 TTCTTTTC 1721570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338916698240