Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 205 1e-47 seq6 140 4e-28 seq8 116 4e-21 >seq2 Length=936589 Score = 205 bits (226), Expect = 1e-47 Identities = 544/819 (66%), Gaps = 18/819 (2%) Strand=Plus/Minus Query 114514 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 114573 |||||| || || || || ||||| || || ||| |||||||| | ||||| || || Sbjct 4208 GTACTCGATGATCTCGGTGCACAAGTTGGACGACTTGATGGTGCCGAGATTCTTCTGGTT 4149 Query 114574 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 114633 ||||| |||| || |||||||| |||||| | || | || ||||| |||| Sbjct 4148 CGACTTCTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGACCTGGGC 4089 Query 114634 CTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCT 114692 || ||| || || | ||| | | | ||| | || | || |||||||| ||||||| Sbjct 4088 CTCGAGGATCGCGTACCAAAGCTTTTGCG-CGGGGATCGTCTTCTTGGCTCGGCCCTCCT 4030 Query 114693 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTG 114752 |||||||||| | | | | ||||| || || | |||| ||| || |||| Sbjct 4029 TCTCGTACTTTTCAAACAAGACGCGGAACTCCTCGCCATAGACCTCGTGGAGACCCGGTG 3970 Query 114753 CCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGT 114812 ||| | |||||||| || | ||| | ||| | |||| ||||||| ||||||||| | Sbjct 3969 CCTCGGCGGGGCAGAACAGGGGCCAGTCACCGGCGGCCTCGACACGCTCCATGAAGAGAT 3910 Query 114813 CTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 114872 | ||||||||||| || |||||||||| ||| ||| |||| || | || || || Sbjct 3909 CGGGGATCCAGAGCGCGAAGAAGAGATCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCT 3850 Query 114873 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 114932 || | || | || || | || || ||||||||||| || ||||| | || | | Sbjct 3849 TGCGAAGGTCGAGGAACTCAAAGACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAAG 3790 Query 114933 ACCC------CTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGC 114986 ||| ||| | | ||| | |||| || || | || ||| || | |||| Sbjct 3789 CCCCGGGGCGCTT--GTTG-CCACCTTGGTCGACGTAGCGTGCGGTGTTGTTGTAGACGC 3733 Query 114987 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCC-CCGA-ATACGAGACTTATT 115044 | ||||| || | ||| || | || | ||| || ||||| ||| |||||| | | Sbjct 3732 GGAGCATGGGGACGATGCCGTTCGAGTAGCCGTTCGTCCCGGCGATGTACGAGCC--GGT 3675 Query 115045 GGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 115104 || | || | |||||| || || || || || || ||| ||||| ||||||| Sbjct 3674 CGCGCGGATGTTGTGGATGCTCAAGCCGATGCCACCGGCGGTCTTGGAGATGAGCGCGCA 3615 Query 115105 CTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCA 115164 | | |||| | ||||||| || ||||||||||| |||| | | || | |||||| Sbjct 3614 CGTCTTGAGCGTATCGTAGATGCCTTCGATCGAGTCGTCCTTCATCGTGACCAAGAAGCA 3555 Query 115165 GCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 115224 ||| | || || || ||||| ||||||||||| || || | |||||| |||| Sbjct 3554 CGACGAGAGCTGCGGGTGGGGCGTACCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAA 3495 Query 115225 CATACCTTGGGACATCTTATCGTAGGTCTCCAAGACG-GCGGGAATGTCTTCCCCGTGAA 115283 | | |||||| | ||| | || || |||| || | ||||| | | ||| | Sbjct 3494 GTAGCGCTCGGACATGAGGTTGTACGACTGCAGGACGCGCTCG-ATGTCATGACTGTGGA 3436 Query 115284 TACCGATCGAGACCCGCATAAACATGTATTG-GGGTGTT 115321 | |||| | ||| ||||| | ||||| ||| ||| ||| Sbjct 3435 TGCCGACGGCGACACGCATGAGCATGTGTTGCGGGCGTT 3397 Score = 84.2 bits (92), Expect = 3e-11 Identities = 215/322 (67%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 8526 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCTCAAAATGAGGAG 8585 || ||||| || |||| ||| ||| || || || || ||||||| ||| | Sbjct 330140 TACCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCCGAGACG 330081 Query 8586 ACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 8645 || |||||||| || || || || || || | ||| | || ||| | || Sbjct 330080 ACCCCCTTCTACCCTCGCTCGCCTTACGGTGTTGCCAAGTTGTACGCCTTCTGGATTGTC 330021 Query 8646 AAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAG 8705 ||||| ||||| || || || | | | |||||| |||||| ||||||||||||||| Sbjct 330020 AAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACGAG 329961 Query 8706 TCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGATGGTATCAAACAAAT 8764 || ||||||||||||| ||||| || | ||||||| | ||| | | || | || Sbjct 329960 TCCCCCCGTCGTGGCCGCACCTTCGTCACGAGGAAGATCTCGCGA-GCTGTCGCCGAGAT 329902 Query 8765 CGTCGC-GGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGG 8823 | |||| ||| | ||| | | || | | || ||| | | ||| || | || |||| Sbjct 329901 C-TCGCTCGGTCAACAGGACTGCCTTTACCTCGGCAACATGGAGGCCAAGCGTGATTGGG 329843 Query 8824 GACACGCCAAGGACTATGTTGA 8845 |||||||| ||||| ||||| Sbjct 329842 GACACGCCCGTGACTACGTTGA 329821 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || |||||||||||||||||| |||||||| || || |||||| || ||| Sbjct 55293 GGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTCAATCC 55352 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 126138 ||||| | || |||||||| | |||||| || Sbjct 55353 GGGCATCAAGCCTCGCTTCTTGAGCCAGAAGAT 55385 >seq6 Length=2534666 Score = 140 bits (154), Expect = 4e-28 Identities = 282/412 (68%), Gaps = 16/412 (4%) Strand=Plus/Minus Query 172615 GATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACC 172674 ||| |||||||| ||||| || ||||||| |||| ||| | ||| ||||| ||| || Sbjct 1950984 GATTAGACCCTTGATGTGAGATCCATCGTGATCCTGATCGGCCATGATCATGAGCTTGCC 1950925 Query 172675 ATAGCGAAGCTCGGAAACATCTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTT 172734 ||| || ||| | || || ||| |||| ||||| || |||||||| || | ||| Sbjct 1950924 ATAACGGAGCGAGTCGACGTCGGTGTACACCTTGCCCTGCTGCAGACCCAAAATTTGCTT 1950865 Query 172735 GAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCA---CTGAAGCATCGCGGACATT 172791 || | | || ||| | ||| | || |||| | | || ||||| || || Sbjct 1950864 GATCGCTTGGATCTCA-GCATTGTCG--AGCAACGCCTTGCCCGCGGCTTCGCGCACGTT 1950808 Query 172792 TTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACC 172851 ||||||| || |||||||| ||||| |||| || ||||| || || || ||||| Sbjct 1950807 GAGCAACTTCCCTCGCAGAGGGAAAACACCATAGTTGTCTCGACCGACGACGGACAGACC 1950748 Query 172852 AGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTT--CCA 172909 | || ||||| | ||| |||||||| || || |||| ||||||||| || || || Sbjct 1950747 CGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCAGTCAAGATGAGCGTGCAATTCGACCC 1950688 Query 172910 GATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGA- 172968 | | | ||| || || ||||||||||| |||| |||| | ||| || || || Sbjct 1950687 GTTCCT--CGTTCCAGCGTTGTTCGCATCTTCCAGCTTGACCAAACCCGTGATACGCGAT 1950630 Query 172969 --CTTGCGGGCACCATCTGTCTTCTTGAGTTCCTTCATCTCCTTGAACTTGG 173018 |||| | ||||| ||||||||||| || || ||||||||||| Sbjct 1950629 CGCTTGTG---TCCATCGGTCTTCTTGAGCATCTGGTCCTGCTTGAACTTGG 1950581 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || || || ||||| ||||| |||||||| || |||||||||||||| ||||||||||| Sbjct 1721595 TGAAGGCCTTCGTCGCGGGATATGAGTTCGTTGGAGAAGCACAGTCCGGGCATGAGACCT 1721654 Query 126119 CGCTTCTTCAACCAGAAAAT 126138 || || || | |||||| || Sbjct 1721655 CGTTTTTTGAGCCAGAAGAT 1721674 >seq8 Length=1461820 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 8526 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCTCAAAATGAGGAG 8585 |||||||| || |||| ||| ||||||| || || || | |||||| ||||||| Sbjct 1423759 TATCAAGCCTCGACCTCCGAGTTGTTTGGCAAGGTCTTCGAGACTCCTCAATCTGAGGAG 1423700 Query 8586 ACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 8645 || |||||| | || || || || || ||| | ||| | || ||| |||| Sbjct 1423699 ACGCCCTTCCACCCTCGTTCGCCTTACGGTGTCGCCAAGTTGTACGCGTTCTGGATCGTC 1423640 Query 8646 AAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAG 8705 ||||| ||||| || || || | | | |||||| |||||| ||||||||||||||| Sbjct 1423639 AAGAACTACCGCGAGTCTTACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACGAG 1423580 Query 8706 TCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATC 8744 || ||||||||||||| |||||| || | ||||||| Sbjct 1423579 TCCCCCCGTCGTGGCCGCACTTTCGTCACGAGGAAGATC 1423541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353420793920