Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 197 2e-45 seq6 140 4e-28 seq8 111 2e-19 >seq2 Length=936589 Score = 197 bits (218), Expect = 2e-45 Identities = 540/816 (66%), Gaps = 12/816 (1%) Strand=Plus/Minus Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||||| || || || || ||||| || || ||| |||||||| | ||||| || || Sbjct 4208 GTACTCGATGATCTCGGTGCACAAGTTGGACGACTTGATGGTGCCGAGATTCTTCTGGTT 4149 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||||| |||| || |||||||||||||| | || | || ||||| |||| Sbjct 4148 CGACTTCTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGACCTGGGC 4089 Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCT 116653 || ||| || || | ||| | | | ||| | || | || |||||||| ||||||| Sbjct 4088 CTCGAGGATCGCGTACCAAAGCTTTTGCG-CGGGGATCGTCTTCTTGGCTCGGCCCTCCT 4030 Query 116654 CCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG-CCTCTGAGAGCCCTGGT 116712 |||||||||| | | | | ||||| || || | || |||| ||| || ||| Sbjct 4029 TCTCGTACTTTTCAAACAAGACGCGGAACTCCTCGCC-ATAGACCTCGTGGAGACCCGGT 3971 Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 |||| | || ||||| || | ||| | ||| | |||| || |||| ||||||||| Sbjct 3970 GCCTCGGCGGGGCAGAACAGGGGCCAGTCACCGGCGGCCTCGACACGCTCCATGAAGAGA 3911 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832 || |||||||||||||| |||||||||| ||| ||| |||| || | || || || Sbjct 3910 TCGGGGATCCAGAGCGCGAAGAAGAGATCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTC 3851 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892 || | || | || || | || || ||||||||||| || ||||| | || | Sbjct 3850 TTGCGAAGGTCGAGGAACTCAAAGACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAA 3791 Query 116893 GACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 | ||| ||| ||| | |||| || || | || || ||| | ||||| Sbjct 3790 GCCCCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGTGCGGTGTTGTTGTAGACGCGG 3731 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCC-CCGA-ATACGAGACTTGTTGG 117007 ||||| || | ||| || | || | ||| || ||||| ||| |||||| | | | | Sbjct 3730 AGCATGGGGACGATGCCGTTCGAGTAGCCGTTCGTCCCGGCGATGTACGAGCC--GGTCG 3673 Query 117008 CTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACT 117067 | | || | ||||||| || || || || || || ||| ||||| | |||||| Sbjct 3672 CGCGGATGTTGTGGATGCTCAAGCCGATGCCACCGGCGGTCTTGGAGATGAGCGCGCACG 3613 Query 117068 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 117127 | |||| | ||||||| || ||||||||||| |||| | | || | |||||| Sbjct 3612 TCTTGAGCGTATCGTAGATGCCTTCGATCGAGTCGTCCTTCATCGTGACCAAGAAGCACG 3553 Query 117128 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 117187 ||| | || || || ||||| ||||||||||| || || | |||||| |||| Sbjct 3552 ACGAGAGCTGCGGGTGGGGCGTACCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGT 3493 Query 117188 TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATAC 117247 | | |||||| | ||| | || || ||| ||||| | | ||| || | Sbjct 3492 AGCGCTCGGACATGAGGTTGTACGACTGCAGGACGCGCTCGATGTCATGACTGTGGATGC 3433 Query 117248 CGATTGAGACCCGCATAAACATGTATTG-GGGTGTT 117282 ||| | ||| ||||| | ||||| ||| ||| ||| Sbjct 3432 CGACGGCGACACGCATGAGCATGTGTTGCGGGCGTT 3397 >seq6 Length=2534666 Score = 140 bits (154), Expect = 4e-28 Identities = 285/417 (68%), Gaps = 16/417 (4%) Strand=Plus/Minus Query 176630 TTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATGAGC 176689 |||| ||| |||||||| ||||| || ||||||| |||| ||| | ||| ||||||||| Sbjct 1950989 TTGATGATTAGACCCTTGATGTGAGATCCATCGTGATCCTGATCGGCCATGATCATGAGC 1950930 Query 176690 CGACCATAGCGAAGCTCGGAAACATCTTGATAATCCTTACCTTGTTGAAGACCCAAAATC 176749 ||||| || ||| | || || || |||| || || || ||||||||||| Sbjct 1950929 TTGCCATAACGGAGCGAGTCGACGTCGGTGTACACCTTGCCCTGCTGCAGACCCAAAATT 1950870 Query 176750 TTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCA---CTGAAGCGTCGCGG 176806 | ||||| | | || ||| | ||| | || |||| | | || ||||| Sbjct 1950869 TGCTTGATCGCTTGGATCTCA-GCATTGTCG--AGCAACGCCTTGCCCGCGGCTTCGCGC 1950813 Query 176807 ACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAG 176866 || || ||||||| || |||||||| ||||| |||| || ||||| || || || Sbjct 1950812 ACGTTGAGCAACTTCCCTCGCAGAGGGAAAACACCATAGTTGTCTCGACCGACGACGGAC 1950753 Query 176867 AGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTT 176926 ||||| | || ||||| | ||| |||||||| || || |||| ||||||||| || || Sbjct 1950752 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCAGTCAAGATGAGCGTGCAATTC 1950693 Query 176927 --CCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTT 176984 || | | | ||| || || ||||||||||| |||| |||| | ||| || || Sbjct 1950692 GACCCGTTCCT--CGTTCCAGCGTTGTTCGCATCTTCCAGCTTGACCAAACCCGTGATAC 1950635 Query 176985 TGGA---CTTACGAGCACCATCTGTCTTCTTGAGTTCCTTCATCTCCTTGAACTTGG 177038 || ||| | ||||| ||||||||||| || || ||||||||||| Sbjct 1950634 GCGATCGCTTGTG---TCCATCGGTCTTCTTGAGCATCTGGTCCTGCTTGAACTTGG 1950581 >seq8 Length=1461820 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 10441 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 10500 |||||||| || |||| ||| ||||||| || || || | || ||| ||||||| Sbjct 1423759 TATCAAGCCTCGACCTCCGAGTTGTTTGGCAAGGTCTTCGAGACTCCTCAATCTGAGGAG 1423700 Query 10501 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 10560 ||||||||| | || || || || || ||| | ||| | || ||| |||| Sbjct 1423699 ACGCCCTTCCACCCTCGTTCGCCTTACGGTGTCGCCAAGTTGTACGCGTTCTGGATCGTC 1423640 Query 10561 AAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAG 10620 ||||| || ||||| || || | | | | |||| |||||| ||||||||||||||| Sbjct 1423639 AAGAACTACCGCGAGTCTTACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACGAG 1423580 Query 10621 TCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATC 10659 || ||||||||||||| |||||| || | ||||||| Sbjct 1423579 TCCCCCCGTCGTGGCCGCACTTTCGTCACGAGGAAGATC 1423541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507015947840