Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07-
16] 24 sequences; 23,461,035 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq2 104 4e-17
>seq2
Length=936589
Score = 104 bits (114), Expect = 4e-17
Identities = 283/431 (66%), Gaps = 2/431 (0%)
Strand=Plus/Minus
Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224
|||||| || || ||| |||||| || || | || ||||| || || | | | | ||
Sbjct 3923 CTCCATGAAGAGATCGGGGATCCAGAGCGCGAAGAAGAGATCGCGAGCGCGGACTTCCTC 3864
Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAA 205284
| || ||||||| | ||| || | | | |||||||||||||||||| |
Sbjct 3863 CTTGCCGTGGTTCTTGCGAAGGTCGAGGAACTCAAAGACGTCGGCGTGCCACGGCTCGAG 3804
Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344
| | ||| | || || || | |||||| ||||| ||||| || ||| | |
Sbjct 3803 GTAGATGGCAAAAGCCCCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGTGCGGTGTT 3744
Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGC 205404
|||| | || || ||||| || || | ||||| | | |||||||| | | ||||
Sbjct 3743 GTTGTAGACGCGGAGCATGGGGACGATGCCGTTCGAGTAGCCGTTCGTCCCGGCGATGTA 3684
Query 205405 CGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGAT 205464
|||||| || | | |||| |||| | ||| || || || | ||||| |||
Sbjct 3683 CGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAGCCGATGCCACCGGCGGTCTTGGAGAT 3624
Query 205465 CTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCA 205523
| |||||| ||||| || || |||||||||| |||| || |||||| || || |
Sbjct 3623 GAGCGCGCACGTCTTG-AGCGTATCGTAGATGCCTTCGATCGAGTCGTCCTTCATCGTGA 3565
Query 205524 CCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGG 205583
||| ||||||| | |||| | | || || |||| ||||||||| || ||
Sbjct 3564 CCAAGAAGCACGACGAGAGCTGCGGGTGGGGCGTACCGGCGTTGAAGAGCGTCGGCGAGG 3505
Query 205584 CGTGGCTGAAG 205594
||||| |||||
Sbjct 3504 CGTGGGTGAAG 3494
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973
||||||||||| ||||||||| ||| || |||||||| || ||||||| |||||||||
Sbjct 55282 AACAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAG 55341
Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGG 160019
| | | | || ||||| | || ||| |||||||| || ||||
Sbjct 55342 AAGGTCAATCCGGGCATCAAGCCTCGCTTCTTGAGCCAGAAGATGG 55387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795154961453440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |