Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 156 5e-33 seq6 123 3e-23 seq8 113 6e-20 >seq2 Length=936589 Score = 156 bits (172), Expect = 5e-33 Identities = 526/808 (65%), Gaps = 21/808 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| || ||||| ||||||| ||||| |||| ||||| | | || || || || Sbjct 3401 CCCGCAACACATGCTCATGCGTGTCGCCGTCGGCATCCACAGTCATGACATCGAGCGCGT 3460 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 || || | ||| || |||||| | | || |||| |||||| | || || |||| Sbjct 3461 CCTGCAGTCGTACAACCTCATGTCCGAGCGCTAC-TTCACCCACGCCTCGCCGACGCTCT 3519 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| ||||| || || || | || || ||| | | | | ||||| | Sbjct 3520 TCAACGCCGGTACGCCCCACCCGCAGCTCTCGTCGTGCTTCTTGGTCACGATGAAGGACG 3579 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | || ||| | ||||| |||| || |||| || || | ||||| ||| || | Sbjct 3580 ACTCGATCGAAGGCATCTACGATACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCG 3639 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTAC 111907 |||| ||||| || |||||| | || | || | | | |||||| | | || || Sbjct 3640 GTGGCATCGGCTTGAGCATCCACAACATCCGCGCGACC--GGCTCGTACATCGCCGGGAC 3697 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || | || | || || | || ||||| ||||| | ||| ||| || ||||| Sbjct 3698 GAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGCGTCTACAACAACACCGCACGCTA 3757 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||||| ||| ||| | | || || | || |||| || ||||| || Sbjct 3758 CGTCGACCAAGGTGGCAACAAGCGCCCCGGGG---CTTTTGCCATCTACCTCGAGCCGTG 3814 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| || || | |||||||| || | || ||||| || | ||||| | || Sbjct 3815 GCACGCCGACGTCTTTGAGTTCCTCGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCG 3874 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | ||||||||||||| ||| |||||||| || |||||||||||| || | || ||| Sbjct 3875 CGCT--CGCGATCTCTTCTTCGCGCTCTGGATCCCCGATCTCTTCATGGAGCGTGTCGAG 3932 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 | || | ||| | || || || || | | ||||||| |||||| ||| | | Sbjct 3933 GCCGCCGGTGACTGGCCCCTGTTCTGCCCCGCCGAGGCACCGGGTCTCCACGAGGTCTAT 3992 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259 || |||||||| | | | | |||||||||| | || | || || | |||| Sbjct 3993 GGCGAGGAGTTCCGCGTCTTGTTTGAAAAGTACGAGAAGGAGGGCCGAGCCAAGAAGACG 4052 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | || || || | | | ||| | || || ||| || | || |||||| |||| || Sbjct 4053 ATCCCCGC-GCAAAAGCTTTGGTACGCGATCCTCGAGGCCCAGGTCGAGACCGGTAACCC 4111 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||||| ||||| |||||| ||| | ||| || || |||||| | || || Sbjct 4112 CTTCATGCTCTACAAGGACGCCGCGAACAAGAAGTCGAACCAGAAGAATCTCGGCACCAT 4171 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATC 112406 |||| |||||| | || || || ||| Sbjct 4172 CAAGTCGTCCAACTTGTGCACCGAGATC 4199 Score = 91.5 bits (100), Expect = 2e-13 Identities = 220/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 13593 CGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAAC 13652 ||| |||| |||||||| | || ||| ||| || ||||| ||| | || || | Sbjct 330146 CGCTTCTACCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 330087 Query 13653 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 13712 ||| ||| ||||||||||| |||||| ||||| || | ||| | || ||| Sbjct 330086 GAGACGACCCCCTTCTACCCTCGCTCGCCTTACGGTGTTGCCAAGTTGTACGCCTTCTGG 330027 Query 13713 CTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAAC 13772 | || ||||| ||||||||||| |||| ||| || ||| ||| |||||||||||| Sbjct 330026 ATTGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAAC 329967 Query 13773 CATGAATCACCGAGACGAGG-TGCAGACTTTGTGACCATGAAGAT-TACCGAGGGTATCA 13830 || || || || | || || ||| ||| || || | |||||| | ||| | | || Sbjct 329966 CACGAGTCCCCCCGTCGTGGCCGCA-CCTTCGTCACGAGGAAGATCTCGCGA-GCTGTCG 329909 Query 13831 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 13890 | ||| | ||| || |||| | | || | | || ||||| | || || | | Sbjct 329908 CCGAGATCTCGCTCGGTCAACAGGACTGCCTTTACCTCGGCAACATGGAGGCCAAGCGTG 329849 Query 13891 ATTGGGGTCACGCGAAGGACTATGTTGA 13918 ||||||| ||||| ||||| ||||| Sbjct 329848 ATTGGGGACACGCCCGTGACTACGTTGA 329821 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 ||||||||||||||||| | ||||| || | ||||||||||||||| ||||| ||| Sbjct 55379 TGGCTCAAGAAGCGAGGCTTGATGCCCGGATTGACCTTCTCCAACGAGCTCATCTCGCGT 55320 Query 102306 GACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| |||||| || ||||| Sbjct 55319 GACGAGGGTCTCCACACCGACTTTGC 55294 >seq6 Length=2534666 Score = 123 bits (136), Expect = 3e-23 Identities = 237/341 (70%), Gaps = 14/341 (4%) Strand=Plus/Minus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| || |||||||||||||| || || |||| ||| ||| | |||||||||||| Sbjct 1950989 TTGATGATTAGACCCTTGATGTGAGATCCATCGTGATCCTGATCGGCCATGATCATGAGC 1950930 Query 176783 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 176842 ||||| || ||| | || || || |||| ||||| || |||||||| || Sbjct 1950929 TTGCCATAACGGAGCGAGTCGACGTCGGTGTACACCTTGCCCTGCTGCAGACCCAAAATT 1950870 Query 176843 TTCTTGAGATCG-TTGAACTCTTGGTTTGATGT-GAGCTGTG---TGACAGAGGCATCAC 176897 | ||||| ||| ||| | ||| | | ||| |||| | || | | ||| || | Sbjct 1950869 TGCTTGA--TCGCTTGGA-TCTCAGCAT--TGTCGAGCAACGCCTTGCCCGCGGCTTCGC 1950815 Query 176898 GAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAG 176957 | || || ||||||| || |||||||| ||||| |||| || ||||| || || | Sbjct 1950814 GCACGTTGAGCAACTTCCCTCGCAGAGGGAAAACACCATAGTTGTCTCGACCGACGACGG 1950755 Query 176958 AGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACT 177017 | ||||||| || ||||||| || || ||||| || || |||| |||||| || || | Sbjct 1950754 ACAGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCAGTCAAGATGAGCGTGCAAT 1950695 Query 177018 TG--CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCA 177056 | || | | | ||| || || ||||||||||| |||| Sbjct 1950694 TCGACCCGTTCCT--CGTTCCAGCGTTGTTCGCATCTTCCA 1950656 Score = 86.0 bits (94), Expect = 8e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 102218 CTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 102277 || ||| ||||||||| | | || | |||||||| || |||||||||||||| || || Sbjct 1721696 CTCCTCAGGTTCCTTCGCCTCCATCTTCTGGCTCAAAAAACGAGGTCTCATGCCCGGACT 1721637 Query 102278 CTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319 |||||||||||||| || || || || ||||| || || || Sbjct 1721636 GTGCTTCTCCAACGAACTCATATCCCGCGACGAAGGCCTTCA 1721595 >seq8 Length=1461820 Score = 113 bits (124), Expect = 6e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 13597 TCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 13656 ||||||||||||| | || ||| ||||||| ||||| ||| | || ||| |||| Sbjct 1423761 TCTATCAAGCCTCGACCTCCGAGTTGTTTGGCAAGGTCTTCGAGACTCCTCAATCTGAGG 1423702 Query 13657 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 13716 |||| |||||| |||| || ||| ||||| ||| | ||| | || ||| ||| Sbjct 1423701 AGACGCCCTTCCACCCTCGTTCGCCTTACGGTGTCGCCAAGTTGTACGCGTTCTGGATCG 1423642 Query 13717 TAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATG 13776 | ||||| |||||||||||||||| ||| || ||| ||| |||||||||||||| | Sbjct 1423641 TCAAGAACTACCGCGAGTCTTACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACG 1423582 Query 13777 AATCACC 13783 | || || Sbjct 1423581 AGTCCCC 1423575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742213777280