Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07-
16] 24 sequences; 23,461,035 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq6 116 4e-21
seq2 98.7 1e-15
>seq6
Length=2534666
Score = 116 bits (128), Expect = 4e-21
Identities = 242/356 (68%), Gaps = 6/356 (2%)
Strand=Plus/Minus
Query 168241 TTGAGAATGAGACCCTTGATATGGCTTCCATCATTATCTGCGTCTGTCATGATCATGAGA 168300
|||| || ||||||||||| || |||||| | ||| || | ||||||||||||
Sbjct 1950989 TTGATGATTAGACCCTTGATGTGAGATCCATCGTGATCCTGATCGGCCATGATCATGAGC 1950930
Query 168301 CGACCATAACGAAGTTCGGAAACATCTTTGTACTCCTTTCCTTGTTGAAGTCCCAAAATT 168360
|||||||| || | || || ||||| |||| || || || || |||||||||
Sbjct 1950929 TTGCCATAACGGAGCGAGTCGACGTCGGTGTACACCTTGCCCTGCTGCAGACCCAAAATT 1950870
Query 168361 TTCTTGAGATCATTGAACTCCTGATTAGATGTCAACTG--TGCCACCGATGAGTCCCTCA 168418
| ||||| | | || ||| ||| |||| |||| || | || | ||
Sbjct 1950869 TGCTTGATCGCTTGGATCTCAGCATTGTCGAGCAACGCCTTGCCCGCG--GCTTCGCGCA 1950812
Query 168419 CGTTTTTACACTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGA 168478
|||| |||| || || || || || || ||||| | |||| ||| |||||||| |
Sbjct 1950811 CGTTGAGCAACTTCCCTCGCAGAGGGAAAACACCATAGTTGTCTCGACCGACGACGGACA 1950752
Query 168479 GACCAGCGACAGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTC 168538
|||| | ||| ||||| | || || ||||| || || |||| |||||| || || || |
Sbjct 1950751 GACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCAGTCAAGATGAGCGTGCAATT-C 1950693
Query 168539 CAGACTGTGC-CGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGAT 168593
| | | | ||| ||||| ||||||||||| |||| ||| | ||| |||||
Sbjct 1950692 GACCCGTTCCTCGTTCCAGCGTTGTTCGCATCTTCCAGCTTGACCAAACCCGTGAT 1950637
>seq2
Length=936589
Score = 98.7 bits (108), Expect = 1e-15
Identities = 264/401 (66%), Gaps = 2/401 (0%)
Strand=Plus/Minus
Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400
|| || || ||||||||||| ||| ||| || | |||||||| ||||| || |
Sbjct 4198 ATCTCGGTGCACAAGTTGGACGACTTGATGGTGCCGAGATTCTTCTGGTTCGACTTCTTG 4139
Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460
|| || ||||| ||||||||| | ||| |||| || || ||| | || ||| ||
Sbjct 4138 TTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGGATC 4079
Query 110461 GCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTT 110519
|| | ||| | | | || ||||||| || || || | || |||| |||||||||
Sbjct 4078 GCGTACCAAAGCTTTTGC-GCGGGGATCGTCTTCTTGGCTCGGCCCTCCTTCTCGTACTT 4020
Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGG 110579
||||| | || |||| || || || || |||||| |||| | ||||
Sbjct 4019 TTCAAACAAGACGCGGAACTCCTCGCCATAGACCTCGTGGAGACCCGGTGCCTCGGCGGG 3960
Query 110580 ACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCA 110639
||||| |||| ||| | || | |||| || | || |||||| || || || |||||
Sbjct 3959 GCAGAACAGGGGCCAGTCACCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGGATCCA 3900
Query 110640 CATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTC 110699
| ||| |||| || || || || | || || | || ||||| ||| || ||
Sbjct 3899 GAGCGCGAAGAAGAGATCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTC 3840
Query 110700 CAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740
| || || | || || | |||||| || ||||| ||||
Sbjct 3839 GAGGAACTCAAAGACGTCGGCGTGCCACGGCTCGAGGTAGA 3799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975823307200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |