Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 196 6e-45 seq8 125 8e-24 >seq2 Length=936589 Score = 196 bits (216), Expect = 6e-45 Identities = 565/860 (66%), Gaps = 12/860 (1%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || ||||| |||||||| || ||| || | | |||||| | || || Sbjct 4252 GCGATCGAGGCCAAGTTGCAAACGGCGCACTCGTCGGGGGCCGAGTACTCGATGATCTCG 4193 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || ||||||||||| ||| || || || | |||||| ||||| ||| ||||| Sbjct 4192 GTGCACAAGTTGGACGACTTGATGGTGCCGAGATTCTTCTGGTTCGACTTCTTGTTCGCG 4133 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 || ||||||||||||||| |||| | || ||||| ||| | || ||| || || | | Sbjct 4132 GCGTCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGGATCGCGTAC 4073 Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 106701 || | | | || || || | | ||||| || |||||| |||||||||| | Sbjct 4072 CAAAGCTTTTGC-GCGGGGATCGTCTTCTTGGCTCGGCCCTCCTTCTCGTACTTTTCAAA 4014 Query 106702 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 106761 | | | |||||||| || | ||| |||||| ||||||| | | || ||||| Sbjct 4013 CAAGACGCGGAACTCCTCGCCATAGACCTCGTGGAGACCCGGTGCCTCGGCGGGGCAGAA 3954 Query 106762 AAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 106821 || | ||| | ||| | |||| || |||| |||||| || || || ||||| || | Sbjct 3953 CAGGGGCCAGTCACCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGGATCCAGAGCGC 3894 Query 106822 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 106881 | |||||||| | | || | || || | || ||||| || | || ||||| Sbjct 3893 GAAGAAGAGATCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAA 3834 Query 106882 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGAC 106937 ||| | || || |||||||| ||||| || |||| || | || || | | | Sbjct 3833 CTCAAAGACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCCCCGGGGCGCTTGTT 3774 Query 106938 GCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATAC 106997 | ||| |||| | || ||||| || ||| ||| | ||||| ||||| || | || | Sbjct 3773 G-CCACCTTGGTCGACGTAGCGTGCGGTGTTGTTGTAGACGCGGAGCATGGGGACGATGC 3715 Query 106998 CATCTGATTGACCATTTGTCCC-CCGA-ATACGAGATTTATTGGCTCTCACATCATGGAT 107055 | | || | || || ||||| ||| |||||| | || | | | ||||| Sbjct 3714 CGTTCGAGTAGCCGTTCGTCCCGGCGATGTACGAG--CCGGTCGCGCGGATGTTGTGGAT 3657 Query 107056 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 107115 | || || || || || || ||| ||||| |||| ||| | | || || | || Sbjct 3656 GCTCAAGCCGATGCCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTATCGTA 3597 Query 107116 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175 ||| || | ||| ||||| ||||| | | || | |||||| || | |||||| Sbjct 3596 GATGCCTTCGATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTG 3537 Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 107235 || ||||| || |||||||| || || | ||||| |||| | | |||||| Sbjct 3536 GGGCGTACCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAG 3477 Query 107236 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295 || ||| | || || ||| || ||||| | | ||||||||||| ||| |||||||| Sbjct 3476 GTTGTACGACTGCAGGACGCGCTCGATGTCATGACTGTGGATGCCGACGGCGACACGCAT 3417 Query 107296 AAACATGTATTG-GGGTGTT 107314 | ||||| ||| ||| ||| Sbjct 3416 GAGCATGTGTTGCGGGCGTT 3397 Score = 104 bits (114), Expect = 3e-17 Identities = 223/328 (68%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 6900 CGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAAC 6959 ||| |||| |||||||| |||| ||| ||| || ||||| ||| | || || | Sbjct 330146 CGCTTCTACCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 330087 Query 6960 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7019 ||| ||| ||||||||||| |||||| ||||| || | ||| | || ||| Sbjct 330086 GAGACGACCCCCTTCTACCCTCGCTCGCCTTACGGTGTTGCCAAGTTGTACGCCTTCTGG 330027 Query 7020 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7079 | ||||| || ||||||||||| |||| ||| |||||| ||| |||||||||||| Sbjct 330026 ATTGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAAC 329967 Query 7080 CATGAATCACCGAGACGAGG-TGCAGACTTTGTCACAAAGAAGAT-TACCGAGGGTATCA 7137 || || || || | || || ||| ||| ||||| | |||||| | ||| | | || Sbjct 329966 CACGAGTCCCCCCGTCGTGGCCGCA-CCTTCGTCACGAGGAAGATCTCGCGA-GCTGTCG 329909 Query 7138 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 7197 | ||| | ||| || |||| | | || | | || ||||| | || || | | Sbjct 329908 CCGAGATCTCGCTCGGTCAACAGGACTGCCTTTACCTCGGCAACATGGAGGCCAAGCGTG 329849 Query 7198 ATTGGGGTCACGCGAAGGACTATGTTGA 7225 ||||||| ||||| ||||| ||||| Sbjct 329848 ATTGGGGACACGCCCGTGACTACGTTGA 329821 >seq8 Length=1461820 Score = 125 bits (138), Expect = 8e-24 Identities = 162/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 6904 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 6963 ||||||||||||| |||| ||| ||||||| ||||| ||| | || ||| |||| Sbjct 1423761 TCTATCAAGCCTCGACCTCCGAGTTGTTTGGCAAGGTCTTCGAGACTCCTCAATCTGAGG 1423702 Query 6964 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 7023 |||| |||||| |||| || ||| ||||| ||| | ||| | || ||| ||| Sbjct 1423701 AGACGCCCTTCCACCCTCGTTCGCCTTACGGTGTCGCCAAGTTGTACGCGTTCTGGATCG 1423642 Query 7024 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 7083 |||| || |||||||||||||||| ||| |||||| ||| |||||||||||||| | Sbjct 1423641 TCAAGAACTACCGCGAGTCTTACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACG 1423582 Query 7084 AATCACCGAGACGAGGTGCAGACTTT-GTCACAAAGAAGAT 7123 | || || | || || | ||||| ||||| | |||||| Sbjct 1423581 AGTCCCCCCGTCGTGG-CCGCACTTTCGTCACGAGGAAGAT 1423542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980623005760