Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07-
16] 24 sequences; 23,461,035 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq2 196 6e-45
seq8 125 8e-24
>seq2
Length=936589
Score = 196 bits (216), Expect = 6e-45
Identities = 565/860 (66%), Gaps = 12/860 (1%)
Strand=Plus/Minus
Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522
||||| || ||||| |||||||| || ||| || | | |||||| | || ||
Sbjct 4252 GCGATCGAGGCCAAGTTGCAAACGGCGCACTCGTCGGGGGCCGAGTACTCGATGATCTCG 4193
Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582
|| ||||||||||| ||| || || || | |||||| ||||| ||| |||||
Sbjct 4192 GTGCACAAGTTGGACGACTTGATGGTGCCGAGATTCTTCTGGTTCGACTTCTTGTTCGCG 4133
Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642
|| ||||||||||||||| |||| | || ||||| ||| | || ||| || || | |
Sbjct 4132 GCGTCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGGATCGCGTAC 4073
Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 106701
|| | | | || || || | | ||||| || |||||| |||||||||| |
Sbjct 4072 CAAAGCTTTTGC-GCGGGGATCGTCTTCTTGGCTCGGCCCTCCTTCTCGTACTTTTCAAA 4014
Query 106702 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 106761
| | | |||||||| || | ||| |||||| ||||||| | | || |||||
Sbjct 4013 CAAGACGCGGAACTCCTCGCCATAGACCTCGTGGAGACCCGGTGCCTCGGCGGGGCAGAA 3954
Query 106762 AAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 106821
|| | ||| | ||| | |||| || |||| |||||| || || || ||||| || |
Sbjct 3953 CAGGGGCCAGTCACCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGGATCCAGAGCGC 3894
Query 106822 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 106881
| |||||||| | | || | || || | || ||||| || | || |||||
Sbjct 3893 GAAGAAGAGATCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAA 3834
Query 106882 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGAC 106937
||| | || || |||||||| ||||| || |||| || | || || | | |
Sbjct 3833 CTCAAAGACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCCCCGGGGCGCTTGTT 3774
Query 106938 GCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATAC 106997
| ||| |||| | || ||||| || ||| ||| | ||||| ||||| || | || |
Sbjct 3773 G-CCACCTTGGTCGACGTAGCGTGCGGTGTTGTTGTAGACGCGGAGCATGGGGACGATGC 3715
Query 106998 CATCTGATTGACCATTTGTCCC-CCGA-ATACGAGATTTATTGGCTCTCACATCATGGAT 107055
| | || | || || ||||| ||| |||||| | || | | | |||||
Sbjct 3714 CGTTCGAGTAGCCGTTCGTCCCGGCGATGTACGAG--CCGGTCGCGCGGATGTTGTGGAT 3657
Query 107056 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 107115
| || || || || || || ||| ||||| |||| ||| | | || || | ||
Sbjct 3656 GCTCAAGCCGATGCCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTATCGTA 3597
Query 107116 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175
||| || | ||| ||||| ||||| | | || | |||||| || | ||||||
Sbjct 3596 GATGCCTTCGATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTG 3537
Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 107235
|| ||||| || |||||||| || || | ||||| |||| | | ||||||
Sbjct 3536 GGGCGTACCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAG 3477
Query 107236 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295
|| ||| | || || ||| || ||||| | | ||||||||||| ||| ||||||||
Sbjct 3476 GTTGTACGACTGCAGGACGCGCTCGATGTCATGACTGTGGATGCCGACGGCGACACGCAT 3417
Query 107296 AAACATGTATTG-GGGTGTT 107314
| ||||| ||| ||| |||
Sbjct 3416 GAGCATGTGTTGCGGGCGTT 3397
Score = 104 bits (114), Expect = 3e-17
Identities = 223/328 (68%), Gaps = 4/328 (1%)
Strand=Plus/Minus
Query 6900 CGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAAC 6959
||| |||| |||||||| |||| ||| ||| || ||||| ||| | || || |
Sbjct 330146 CGCTTCTACCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 330087
Query 6960 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7019
||| ||| ||||||||||| |||||| ||||| || | ||| | || |||
Sbjct 330086 GAGACGACCCCCTTCTACCCTCGCTCGCCTTACGGTGTTGCCAAGTTGTACGCCTTCTGG 330027
Query 7020 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7079
| ||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||||
Sbjct 330026 ATTGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAAC 329967
Query 7080 CATGAATCACCGAGACGAGG-TGCAGACTTTGTCACAAAGAAGAT-TACCGAGGGTATCA 7137
|| || || || | || || ||| ||| ||||| | |||||| | ||| | | ||
Sbjct 329966 CACGAGTCCCCCCGTCGTGGCCGCA-CCTTCGTCACGAGGAAGATCTCGCGA-GCTGTCG 329909
Query 7138 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 7197
| ||| | ||| || |||| | | || | | || ||||| | || || | |
Sbjct 329908 CCGAGATCTCGCTCGGTCAACAGGACTGCCTTTACCTCGGCAACATGGAGGCCAAGCGTG 329849
Query 7198 ATTGGGGTCACGCGAAGGACTATGTTGA 7225
||||||| ||||| ||||| |||||
Sbjct 329848 ATTGGGGACACGCCCGTGACTACGTTGA 329821
>seq8
Length=1461820
Score = 125 bits (138), Expect = 8e-24
Identities = 162/221 (73%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 6904 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 6963
||||||||||||| |||| ||| ||||||| ||||| ||| | || ||| ||||
Sbjct 1423761 TCTATCAAGCCTCGACCTCCGAGTTGTTTGGCAAGGTCTTCGAGACTCCTCAATCTGAGG 1423702
Query 6964 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 7023
|||| |||||| |||| || ||| ||||| ||| | ||| | || ||| |||
Sbjct 1423701 AGACGCCCTTCCACCCTCGTTCGCCTTACGGTGTCGCCAAGTTGTACGCGTTCTGGATCG 1423642
Query 7024 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 7083
|||| || |||||||||||||||| ||| |||||| ||| |||||||||||||| |
Sbjct 1423641 TCAAGAACTACCGCGAGTCTTACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACG 1423582
Query 7084 AATCACCGAGACGAGGTGCAGACTTT-GTCACAAAGAAGAT 7123
| || || | || || | ||||| ||||| | ||||||
Sbjct 1423581 AGTCCCCCCGTCGTGG-CCGCACTTTCGTCACGAGGAAGAT 1423542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980623005760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |