Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07-
16] 24 sequences; 23,461,035 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq2 291 2e-73
seq6 109 1e-18
>seq2
Length=936589
Score = 291 bits (322), Expect = 2e-73
Identities = 807/1227 (66%), Gaps = 24/1227 (2%)
Strand=Plus/Minus
Query 213192 GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251
|||| || ||||||| || | ||||||| ||||||||| || || |||| | |||||
Sbjct 4540 GCCATATCACAGGACGACTCGATCGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTG 4481
Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311
||||| ||||| || || ||| |||||| || | |||| | || |||| |
Sbjct 4480 AGCTTGCGAGCCTCGGGCGAGTCGAACGGCATCGCCAAGGCCATGAACGCGTCGGCCAAC 4421
Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370
|| || || |||||||||||||| | ||| | | ||| || || | || ||| |
Sbjct 4420 CCTTGCACTCCGATGCCGATGGGACGGTGGCGGAAGTTGGAGTTTTGCGC-CTCGATGAC 4362
Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430
|||||| ||||| ||||||||| ||| | |||| | | | || |||| ||| |
Sbjct 4361 GGGGTAGTAGTTGACGTCGATGATGCGGTTCAAGTTGAACGCGACGACCTTGGCGACCTC 4302
Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAA-CTCAGGCAGGGCGA 213489
| ||| | || |||| | || | |||| || | || ||| |||| ||||
Sbjct 4301 GTGCAGCTTCT------TGAAGTCATACACGCCGTTCTTGATGAAGCTC-GGCAACGCGA 4249
Query 213490 TGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGC 213549
| ||||| |||||||||||| ||| | | | | | |||||| |||||||||||||
Sbjct 4248 TCGAGGCCAAGTTGCAAACGGCGCACTCGTCGGGGGCCGAGTACTCGATGATCTCGGTGC 4189
Query 213550 ACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAAT 213609
||| |||| | ||||||||| || |||| ||||| ||||| ||| || | |
Sbjct 4188 ACAAGTTGGACGACTTGATGGTGCCGAGATTCTTCTGGTTCGACTTCTTGTTCGCGGCGT 4129
Query 213610 CCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGA 213669
|||||||||||||| ||||| |||||||| | ||||| | | || ||| | ||| |
Sbjct 4128 CCTTGTAGAGCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGGATCGCGTACCAAA 4069
Query 213670 GGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGA 213729
| | || || | | | || |||| | | |||||||| ||| | |
Sbjct 4068 GCTTTTGCGCGGGGATCGTCTTCTTG---GCTCGGCCCTCCTTCTCGTACTTTTCAAACA 4012
Query 213730 GCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGA 213789
|| ||| || | ||| ||||| || || ||||| ||||| || | |
Sbjct 4011 AGACGCGGAACTCCTCGCCATAGACCTCGTGGAGACCCGGTGCCTCGGCGGGGCAGAACA 3952
Query 213790 GGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGG 213849
|| |||||| ||| | | ||| | || |||||| || || |||| ||| ||||||
Sbjct 3951 GGGGCCAGTCACCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGGATCCAGAGCGCGA 3892
Query 213850 TGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGT 213909
||| || || | | | || ||| || ||| ||||| || || || || |
Sbjct 3891 AGAAGAGATCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAACT 3832
Query 213910 CAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGC 213966
|||||| ||| |||||||||||||| | |||||||||||| || || | || | ||||
Sbjct 3831 CAAAGACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCCCCGGGGCGCTTGTTGC 3772
Query 213967 CGCCCTGGTCCAC-CAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCG 214025
| || ||||| || ||| | || ||||| ||| ||| || | ||| || | |||
Sbjct 3771 CACCTTGGTCGACGTAGCGT-GCGGTGTTGTTGTAGACGCGGAGCATGGGGACGATGCCG 3713
Query 214026 TTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAG 214085
|| || | ||||| || || || || |||||||||| || | | |||| |||
Sbjct 3712 TTCGAGTAGCCGTTCGTCCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATGCTC 3653
Query 214086 AGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATG 214145
| || |||||||||||| ||||||||| | ||||| | | | || || ||||
Sbjct 3652 AAGCCGATGCCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTATCGTAGATG 3593
Query 214146 CCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGAC 214205
|| | || ||| || | | | | ||||||||| ||||||||| || || |
Sbjct 3592 CCTTCGATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGGGGC 3533
Query 214206 GAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTG 214265
| || | |||||| ||||| || ||| ||| | | | | || | ||| ||
Sbjct 3532 GTACCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTG 3473
Query 214266 TAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGC 214325
|| | || |||||| |||||| || ||||||| | ||| | ||| |||
Sbjct 3472 TACGACTGCAGGACGCGCTCGATGTCATGACTGTGGATGCCGACGGCGACACGCATGAGC 3413
Query 214326 ATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTTG---AGCAGGTAGGAGCGCTCC 214382
||||| || || | || || | ||| | | || |||| ||||||||||||
Sbjct 3412 ATGTGTTGCGGGCGTTC---GGCAACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCA 3356
Query 214383 AGAGTCTTGAACCCAAAGTAGGAGTAG 214409
|| |||||||| ||||||||| ||||
Sbjct 3355 AGCGTCTTGAAGCCAAAGTAGTTGTAG 3329
Score = 89.7 bits (98), Expect = 1e-12
Identities = 154/223 (69%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513
||||||||| ||||||||| | ||||| |||||| || |||||| | |||
Sbjct 55909 GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGCGGACTGCACCTCACCGGAGAAGCGCTC 55968
Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573
| || ||||| ||||| || || || || || ||||||||||| ||||| || |
Sbjct 55969 GACCAAGTTCTCGTTGACGATGCCGTCGGACGCGGCAAAGAAGGCGAGGACGTGCGAGAT 56028
Query 48574 GAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTC 48630
||| | |||||||| | | |||| || |||| | || | ||| ||| || |||
Sbjct 56029 GAAGTAGCGCTCGTCGGGCTTGAGTTTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTC 56088
Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTAC 48673
|| ||||| | ||||||||||| || || || ||||||
Sbjct 56089 CATCTCTTCGGCGGTCCAGAAGGATGCTTCGGCCTTCTTGTAC 56131
>seq6
Length=2534666
Score = 109 bits (120), Expect = 1e-18
Identities = 165/234 (71%), Gaps = 3/234 (1%)
Strand=Plus/Plus
Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513
||| || || ||||| ||| ||| ||||| | |||||| || | ||||| || ||
Sbjct 1722147 GATTTGAAAGCCGTAAAAGCACCTCGCCTCCGCGAACTGCACCTCACTCGAGAACCTTTC 1722206
Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573
| || ||||||||| || | |||||| || || || |||||||| || || || |
Sbjct 1722207 GACCAAATTCTCATTCACAACCCCATCCGAGGCGGCGAAGAAGGCGAGCACGTGGGCGAC 1722266
Query 48574 GAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTC 48630
||| | ||| || | || | |||| | |||| | || | ||| ||||| |||||
Sbjct 1722267 GAAGTAGCGTTCATCGTTGTTGAGCTTGTGGTGCCAGTCGTGCAGGTCGTTGCCGAGGTC 1722326
Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684
| ||||| | | |||||||||||| |||||| |||||||||| |||| ||
Sbjct 1722327 GATCTCTTCGGCCGACCAGAAGGACGCTTGTGCTTGTTTGTACATGGCCCAGAT 1722380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931532520540160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |