Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 291 2e-73 seq6 109 1e-18 >seq2 Length=936589 Score = 291 bits (322), Expect = 2e-73 Identities = 807/1227 (66%), Gaps = 24/1227 (2%) Strand=Plus/Minus Query 213192 GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 |||| || ||||||| || | ||||||| ||||||||| || || |||| | ||||| Sbjct 4540 GCCATATCACAGGACGACTCGATCGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTG 4481 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 ||||| ||||| || || ||| |||||| || | |||| | || |||| | Sbjct 4480 AGCTTGCGAGCCTCGGGCGAGTCGAACGGCATCGCCAAGGCCATGAACGCGTCGGCCAAC 4421 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370 || || || |||||||||||||| | ||| | | ||| || || | || ||| | Sbjct 4420 CCTTGCACTCCGATGCCGATGGGACGGTGGCGGAAGTTGGAGTTTTGCGC-CTCGATGAC 4362 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 |||||| ||||| ||||||||| ||| | |||| | | | || |||| ||| | Sbjct 4361 GGGGTAGTAGTTGACGTCGATGATGCGGTTCAAGTTGAACGCGACGACCTTGGCGACCTC 4302 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAA-CTCAGGCAGGGCGA 213489 | ||| | || |||| | || | |||| || | || ||| |||| |||| Sbjct 4301 GTGCAGCTTCT------TGAAGTCATACACGCCGTTCTTGATGAAGCTC-GGCAACGCGA 4249 Query 213490 TGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGC 213549 | ||||| |||||||||||| ||| | | | | | |||||| ||||||||||||| Sbjct 4248 TCGAGGCCAAGTTGCAAACGGCGCACTCGTCGGGGGCCGAGTACTCGATGATCTCGGTGC 4189 Query 213550 ACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAAT 213609 ||| |||| | ||||||||| || |||| ||||| ||||| ||| || | | Sbjct 4188 ACAAGTTGGACGACTTGATGGTGCCGAGATTCTTCTGGTTCGACTTCTTGTTCGCGGCGT 4129 Query 213610 CCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGA 213669 |||||||||||||| ||||| |||||||| | ||||| | | || ||| | ||| | Sbjct 4128 CCTTGTAGAGCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGGATCGCGTACCAAA 4069 Query 213670 GGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGA 213729 | | || || | | | || |||| | | |||||||| ||| | | Sbjct 4068 GCTTTTGCGCGGGGATCGTCTTCTTG---GCTCGGCCCTCCTTCTCGTACTTTTCAAACA 4012 Query 213730 GCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGA 213789 || ||| || | ||| ||||| || || ||||| ||||| || | | Sbjct 4011 AGACGCGGAACTCCTCGCCATAGACCTCGTGGAGACCCGGTGCCTCGGCGGGGCAGAACA 3952 Query 213790 GGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGG 213849 || |||||| ||| | | ||| | || |||||| || || |||| ||| |||||| Sbjct 3951 GGGGCCAGTCACCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGGATCCAGAGCGCGA 3892 Query 213850 TGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGT 213909 ||| || || | | | || ||| || ||| ||||| || || || || | Sbjct 3891 AGAAGAGATCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAACT 3832 Query 213910 CAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGC 213966 |||||| ||| |||||||||||||| | |||||||||||| || || | || | |||| Sbjct 3831 CAAAGACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCCCCGGGGCGCTTGTTGC 3772 Query 213967 CGCCCTGGTCCAC-CAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCG 214025 | || ||||| || ||| | || ||||| ||| ||| || | ||| || | ||| Sbjct 3771 CACCTTGGTCGACGTAGCGT-GCGGTGTTGTTGTAGACGCGGAGCATGGGGACGATGCCG 3713 Query 214026 TTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAG 214085 || || | ||||| || || || || |||||||||| || | | |||| ||| Sbjct 3712 TTCGAGTAGCCGTTCGTCCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATGCTC 3653 Query 214086 AGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATG 214145 | || |||||||||||| ||||||||| | ||||| | | | || || |||| Sbjct 3652 AAGCCGATGCCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTATCGTAGATG 3593 Query 214146 CCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGAC 214205 || | || ||| || | | | | ||||||||| ||||||||| || || | Sbjct 3592 CCTTCGATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGGGGC 3533 Query 214206 GAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTG 214265 | || | |||||| ||||| || ||| ||| | | | | || | ||| || Sbjct 3532 GTACCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTG 3473 Query 214266 TAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGC 214325 || | || |||||| |||||| || ||||||| | ||| | ||| ||| Sbjct 3472 TACGACTGCAGGACGCGCTCGATGTCATGACTGTGGATGCCGACGGCGACACGCATGAGC 3413 Query 214326 ATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTTG---AGCAGGTAGGAGCGCTCC 214382 ||||| || || | || || | ||| | | || |||| |||||||||||| Sbjct 3412 ATGTGTTGCGGGCGTTC---GGCAACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCA 3356 Query 214383 AGAGTCTTGAACCCAAAGTAGGAGTAG 214409 || |||||||| ||||||||| |||| Sbjct 3355 AGCGTCTTGAAGCCAAAGTAGTTGTAG 3329 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513 ||||||||| ||||||||| | ||||| |||||| || |||||| | ||| Sbjct 55909 GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGCGGACTGCACCTCACCGGAGAAGCGCTC 55968 Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573 | || ||||| ||||| || || || || || ||||||||||| ||||| || | Sbjct 55969 GACCAAGTTCTCGTTGACGATGCCGTCGGACGCGGCAAAGAAGGCGAGGACGTGCGAGAT 56028 Query 48574 GAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTC 48630 ||| | |||||||| | | |||| || |||| | || | ||| ||| || ||| Sbjct 56029 GAAGTAGCGCTCGTCGGGCTTGAGTTTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTC 56088 Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTAC 48673 || ||||| | ||||||||||| || || || |||||| Sbjct 56089 CATCTCTTCGGCGGTCCAGAAGGATGCTTCGGCCTTCTTGTAC 56131 >seq6 Length=2534666 Score = 109 bits (120), Expect = 1e-18 Identities = 165/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513 ||| || || ||||| ||| ||| ||||| | |||||| || | ||||| || || Sbjct 1722147 GATTTGAAAGCCGTAAAAGCACCTCGCCTCCGCGAACTGCACCTCACTCGAGAACCTTTC 1722206 Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573 | || ||||||||| || | |||||| || || || |||||||| || || || | Sbjct 1722207 GACCAAATTCTCATTCACAACCCCATCCGAGGCGGCGAAGAAGGCGAGCACGTGGGCGAC 1722266 Query 48574 GAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTC 48630 ||| | ||| || | || | |||| | |||| | || | ||| ||||| ||||| Sbjct 1722267 GAAGTAGCGTTCATCGTTGTTGAGCTTGTGGTGCCAGTCGTGCAGGTCGTTGCCGAGGTC 1722326 Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 | ||||| | | |||||||||||| |||||| |||||||||| |||| || Sbjct 1722327 GATCTCTTCGGCCGACCAGAAGGACGCTTGTGCTTGTTTGTACATGGCCCAGAT 1722380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532520540160