Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 277 3e-69 seq6 93.3 8e-14 >seq2 Length=936589 Score = 277 bits (306), Expect = 3e-69 Identities = 811/1234 (66%), Gaps = 39/1234 (3%) Strand=Plus/Minus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTCGGGAGAA 221479 |||||||||||||||||||| |||||| ||||||||| |||| |||||||| || Sbjct 4516 GCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG---CTTGCGAGCCTCGGGCGAG 4460 Query 221480 GTGAAGGGCATACGC--AGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 ||| ||||| ||| || |||| | ||||||||| || || |||||||| |||| Sbjct 4459 TCGAACGGCAT-CGCCAAGGCCATGAACG-CGTCGGCCAACCCTTGCACTCCGATGCCGA 4402 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 |||| | ||| | |||||| ||| || ||||| || |||||||||||| Sbjct 4401 TGGGACGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGGTAGTAGTTGACGTCGA 4342 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | ||| | ||| | | || ||| || | |||||| |||||||| ||| Sbjct 4341 TGATGCGGTTCAAGTTGAACGCGACGACCTTGGCGACCTCGTGCAGCTTCT------TGA 4288 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 | | || ||||| || || | | || ||| ||| | || ||||| Sbjct 4287 AGTCATACACGCCGT--TCTTGATGAAGCTCGGCAAC-GCGAT--------CGA-GGCCA 4240 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777 ||| || ||||| |||||| | | |||| |||||||| || || | |||| Sbjct 4239 AGTTGCAAACGGCGCACTCGTCGGGGGCCGAGTACTCGATGATCTCGGTGCACAAGTTGG 4180 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 |||||||||| || || | || || || ||||| || || ||||||||||||| Sbjct 4179 ACGACTTGATGGTGCCGAGATTCTTCTGGTTCGACTTCTTGTTCGCGGCGTCCTTGTAGA 4120 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897 |||| ||||| || ||||| | ||| ||| | || ||| || ||| || | | | Sbjct 4119 GCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGGATCGCGTACCAAAGCTTTTGCG 4060 Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAA 221957 || | |||| ||||| || ||||| ||| || ||| | | | | | | Sbjct 4059 CGGGGATCGTCTTCTTGGCTCGGCCCTC---CTTCTCGTACTTTTCAAACAAGACGCGGA 4003 Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017 ||| || || || |||||| || || || | |||||| || | ||| ||||| Sbjct 4002 ACTCCTCGCCATAGACCTCGTGGAGACCCGGTGCCTCGGCGGGGCAGAACAGGGGCCAGT 3943 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 | | | | ||| | || ||||||||| || |||||||| ||||| ||||||| Sbjct 3942 CACCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGGATCCAGAGCGCGAAGAAGAGAT 3883 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 | | | || |||||| ||||| ||| || | || || | |||||||| | || Sbjct 3882 CGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAACTCAAAGACGT 3823 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197 | |||||||||||||| || |||| ||| | ||| ||||| |||||||||||||| || | Sbjct 3822 CGGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCCCCGGGGCGCTTGTTGCCACCTTGGT 3763 Query 222198 CCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGA 222256 | | | | | | | | |||| ||| ||| || | || || | ||||| || Sbjct 3762 CGA-CGTAGCGTGCGGTGTTGTTGTAGACGCGGAGCATGGGGACGATGCCGTTCGAGTAG 3704 Query 222257 CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGAT 222315 ||||| || || ||||||| ||| || | | ||| ||| | || |||||| Sbjct 3703 CCGTTCGTCCCGGCGATGTACGAGCCGGTCGCGCGGATGTT-GTGGATGCTCAAGCCGAT 3645 Query 222316 ACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCAT 222375 ||||||||| || ||||| | ||||| ||||||| || || |||||| || || Sbjct 3644 GCCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTATCGTAGATGCCTTCGAT 3585 Query 222376 AGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGC 222435 ||||| ||||| | | | || || || ||||| | ||| | | || | || ||| Sbjct 3584 CGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGGGGCGTACCGGC 3525 Query 222436 GTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 ||| || ||||| || |||||| || ||||||| | ||||| || | ||||| || Sbjct 3524 GTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTGTACGACTG 3465 Query 222496 TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTG 222555 | ||| | |||||| | | ||| || | |||| | |||| ||||| || Sbjct 3464 CAGGACGCGCTCGATGTCATGACTGTGGATGCCGACGGCGACACGCATGAGCATGTGTTG 3405 Query 222556 GGGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTG 222613 || | || || ||| | | | || |||| ||| || || || |||||| Sbjct 3404 CGGGCGTTCGGCA--ACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCAAGCGTCTTG 3347 Query 222614 AACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGT 222647 || |||||||||||| | ||||||| | | ||| Sbjct 3346 AAGCCAAAGTAGTTGTAGCCAAAGTCACGGTCGT 3313 Score = 116 bits (128), Expect = 7e-21 Identities = 146/200 (73%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 25921 GGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT 25980 || ||||| || ||||||||||||||||| || || |||||||| || ||| Sbjct 55400 GGCTCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGAGGCTTGATGCCCGGATTGACCTTC 55341 Query 25981 TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||||||||||||||| | |||||||||||||||| || ||||||||||| || | | Sbjct 55340 TCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTGTTC 55281 Query 26041 ACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCT 26100 | |||| | | | |||| | || |||||| | |||||||| ||||| Sbjct 55280 TC---CCACCTCGAGCGAAGACCTCACCCCGACACCGTCGCCCTCATCATCAAGGAGGCC 55224 Query 26101 GTGGAGATCGAGAAGGAGTT 26120 || ||||||||||||||||| Sbjct 55223 GTCGAGATCGAGAAGGAGTT 55204 Score = 109 bits (120), Expect = 1e-18 Identities = 159/224 (71%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 25488 GTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCCAAGGACAT 25547 |||||||||||| || || |||||||||||||||||| || || |||||||||| Sbjct 56131 GTACAAGAAGGCCGAAGCATCCTTCTGGACCGCCGAAGAGATGGACTTGTCCAAGGACAT 56072 Query 25548 GGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTG 25602 | ||| |||| || ||| | || ||||||| | || || | |||| | Sbjct 56071 GCACGACTGGGACAACAAACTCAAGCC--CGACGAGCGCTACTTCATCTCGCACGTCCTC 56014 Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGG 25662 || |||||||| || || || || || || |||||||| || |||| | ||| || | Sbjct 56013 GCCTTCTTTGCCGCGTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCGCTTCTCCGGT 55954 Query 25663 GAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || ||||||| || ||||| || |||||||| |||||||| Sbjct 55953 GAGGTGCAGTCCGCCGAGGCTCGATGCTTCTACGGCTTCCAGAT 55910 >seq6 Length=2534666 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||| |||||||| | || ||| || |||| | ||||||||||| || || Sbjct 1722380 ATCTGGGCCATGTACAAACAAGCACAAGCGTCCTTCTGGTCGGCCGAAGAGATCGACCTC 1722321 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 | ||| ||| || ||| |||| || |||| | ||| || || | | || || Sbjct 1722320 GGCAACGACCTGCACGACTGGCACCACAAGCTCAA--CAACGATGAACGCTACTTCGTCG 1722263 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 ||||| | || ||||| || ||||| ||||| | ||||| |||||| || ||| | Sbjct 1722262 CCCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGGGTTGTGAATGAGAATTTGGTCGAAA 1722203 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 | ||| | || || ||||||| || |||||| | ||| || ||||| || || || Sbjct 1722202 GGTTCTCGAGTGAGGTGCAGTTCGCGGAGGCGAGGTGCTTTTACGGCTTTCAAAT 1722148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844521346560