Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07-
16] 24 sequences; 23,461,035 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2 277 3e-69
seq6 93.3 8e-14
>seq2
Length=936589
Score = 277 bits (306), Expect = 3e-69
Identities = 811/1234 (66%), Gaps = 39/1234 (3%)
Strand=Plus/Minus
Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTCGGGAGAA 221479
|||||||||||||||||||| |||||| ||||||||| |||| |||||||| ||
Sbjct 4516 GCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG---CTTGCGAGCCTCGGGCGAG 4460
Query 221480 GTGAAGGGCATACGC--AGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537
||| ||||| ||| || |||| | ||||||||| || || |||||||| ||||
Sbjct 4459 TCGAACGGCAT-CGCCAAGGCCATGAACG-CGTCGGCCAACCCTTGCACTCCGATGCCGA 4402
Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597
|||| | ||| | |||||| ||| || ||||| || ||||||||||||
Sbjct 4401 TGGGACGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGGTAGTAGTTGACGTCGA 4342
Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657
| | ||| | ||| | | || ||| || | |||||| |||||||| |||
Sbjct 4341 TGATGCGGTTCAAGTTGAACGCGACGACCTTGGCGACCTCGTGCAGCTTCT------TGA 4288
Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717
| | || ||||| || || | | || ||| ||| | || |||||
Sbjct 4287 AGTCATACACGCCGT--TCTTGATGAAGCTCGGCAAC-GCGAT--------CGA-GGCCA 4240
Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777
||| || ||||| |||||| | | |||| |||||||| || || | ||||
Sbjct 4239 AGTTGCAAACGGCGCACTCGTCGGGGGCCGAGTACTCGATGATCTCGGTGCACAAGTTGG 4180
Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837
|||||||||| || || | || || || ||||| || || |||||||||||||
Sbjct 4179 ACGACTTGATGGTGCCGAGATTCTTCTGGTTCGACTTCTTGTTCGCGGCGTCCTTGTAGA 4120
Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897
|||| ||||| || ||||| | ||| ||| | || ||| || ||| || | | |
Sbjct 4119 GCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGGATCGCGTACCAAAGCTTTTGCG 4060
Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAA 221957
|| | |||| ||||| || ||||| ||| || ||| | | | | | |
Sbjct 4059 CGGGGATCGTCTTCTTGGCTCGGCCCTC---CTTCTCGTACTTTTCAAACAAGACGCGGA 4003
Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017
||| || || || |||||| || || || | |||||| || | ||| |||||
Sbjct 4002 ACTCCTCGCCATAGACCTCGTGGAGACCCGGTGCCTCGGCGGGGCAGAACAGGGGCCAGT 3943
Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077
| | | | ||| | || ||||||||| || |||||||| ||||| |||||||
Sbjct 3942 CACCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGGATCCAGAGCGCGAAGAAGAGAT 3883
Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137
| | | || |||||| ||||| ||| || | || || | |||||||| | ||
Sbjct 3882 CGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAACTCAAAGACGT 3823
Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197
| |||||||||||||| || |||| ||| | ||| ||||| |||||||||||||| || |
Sbjct 3822 CGGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCCCCGGGGCGCTTGTTGCCACCTTGGT 3763
Query 222198 CCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGA 222256
| | | | | | | | |||| ||| ||| || | || || | ||||| ||
Sbjct 3762 CGA-CGTAGCGTGCGGTGTTGTTGTAGACGCGGAGCATGGGGACGATGCCGTTCGAGTAG 3704
Query 222257 CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGAT 222315
||||| || || ||||||| ||| || | | ||| ||| | || ||||||
Sbjct 3703 CCGTTCGTCCCGGCGATGTACGAGCCGGTCGCGCGGATGTT-GTGGATGCTCAAGCCGAT 3645
Query 222316 ACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCAT 222375
||||||||| || ||||| | ||||| ||||||| || || |||||| || ||
Sbjct 3644 GCCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTATCGTAGATGCCTTCGAT 3585
Query 222376 AGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGC 222435
||||| ||||| | | | || || || ||||| | ||| | | || | || |||
Sbjct 3584 CGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGGGGCGTACCGGC 3525
Query 222436 GTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495
||| || ||||| || |||||| || ||||||| | ||||| || | ||||| ||
Sbjct 3524 GTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTGTACGACTG 3465
Query 222496 TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTG 222555
| ||| | |||||| | | ||| || | |||| | |||| ||||| ||
Sbjct 3464 CAGGACGCGCTCGATGTCATGACTGTGGATGCCGACGGCGACACGCATGAGCATGTGTTG 3405
Query 222556 GGGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTG 222613
|| | || || ||| | | | || |||| ||| || || || ||||||
Sbjct 3404 CGGGCGTTCGGCA--ACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCAAGCGTCTTG 3347
Query 222614 AACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGT 222647
|| |||||||||||| | ||||||| | | |||
Sbjct 3346 AAGCCAAAGTAGTTGTAGCCAAAGTCACGGTCGT 3313
Score = 116 bits (128), Expect = 7e-21
Identities = 146/200 (73%), Gaps = 3/200 (2%)
Strand=Plus/Minus
Query 25921 GGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT 25980
|| ||||| || ||||||||||||||||| || || |||||||| || |||
Sbjct 55400 GGCTCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGAGGCTTGATGCCCGGATTGACCTTC 55341
Query 25981 TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040
||||||||||||||| | |||||||||||||||| || ||||||||||| || | |
Sbjct 55340 TCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTGTTC 55281
Query 26041 ACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCT 26100
| |||| | | | |||| | || |||||| | |||||||| |||||
Sbjct 55280 TC---CCACCTCGAGCGAAGACCTCACCCCGACACCGTCGCCCTCATCATCAAGGAGGCC 55224
Query 26101 GTGGAGATCGAGAAGGAGTT 26120
|| |||||||||||||||||
Sbjct 55223 GTCGAGATCGAGAAGGAGTT 55204
Score = 109 bits (120), Expect = 1e-18
Identities = 159/224 (71%), Gaps = 7/224 (3%)
Strand=Plus/Minus
Query 25488 GTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCCAAGGACAT 25547
|||||||||||| || || |||||||||||||||||| || || ||||||||||
Sbjct 56131 GTACAAGAAGGCCGAAGCATCCTTCTGGACCGCCGAAGAGATGGACTTGTCCAAGGACAT 56072
Query 25548 GGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTG 25602
| ||| |||| || ||| | || ||||||| | || || | |||| |
Sbjct 56071 GCACGACTGGGACAACAAACTCAAGCC--CGACGAGCGCTACTTCATCTCGCACGTCCTC 56014
Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGG 25662
|| |||||||| || || || || || || |||||||| || |||| | ||| || |
Sbjct 56013 GCCTTCTTTGCCGCGTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCGCTTCTCCGGT 55954
Query 25663 GAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|| ||||||| || ||||| || |||||||| ||||||||
Sbjct 55953 GAGGTGCAGTCCGCCGAGGCTCGATGCTTCTACGGCTTCCAGAT 55910
>seq6
Length=2534666
Score = 93.3 bits (102), Expect = 8e-14
Identities = 162/235 (69%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| |||| |||||||| | || ||| || |||| | ||||||||||| || ||
Sbjct 1722380 ATCTGGGCCATGTACAAACAAGCACAAGCGTCCTTCTGGTCGGCCGAAGAGATCGACCTC 1722321
Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591
| ||| ||| || ||| |||| || |||| | ||| || || | | || ||
Sbjct 1722320 GGCAACGACCTGCACGACTGGCACCACAAGCTCAA--CAACGATGAACGCTACTTCGTCG 1722263
Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651
||||| | || ||||| || ||||| ||||| | ||||| |||||| || ||| |
Sbjct 1722262 CCCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGGGTTGTGAATGAGAATTTGGTCGAAA 1722203
Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
| ||| | || || ||||||| || |||||| | ||| || ||||| || || ||
Sbjct 1722202 GGTTCTCGAGTGAGGTGCAGTTCGCGGAGGCGAGGTGCTTTTACGGCTTTCAAAT 1722148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844521346560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |