Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 241 2e-57 seq17 104 3e-16 seq20 93.3 5e-13 >seq2 Length=936589 Score = 241 bits (266), Expect = 2e-57 Identities = 338/471 (72%), Gaps = 19/471 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||||||||| || |||| ||| |||||||||||||||| |||| |||||| || Sbjct 3766 TGGTCGACGTAGCGTGCGGTGTTGTTGTAGACGCGGAGCATGGGGACGATGCCGTTCGAG 3707 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| || || || | ||| | ||||| ||||| | ||||| | |||||| Sbjct 3706 TAGCCGTTCGTCCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAGCCG 3647 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| ||||| | ||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct 3646 ATGCCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTATCGTAGATGCCTTCG 3587 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||||||| ||||||| || | |||||||||||| |||||||| | ||| ||| Sbjct 3586 ATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGGGGCGTACCG 3527 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 |||||||||||||| |||| || |||||| | || |||||| || ||| | Sbjct 3526 GCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTGTACGAC 3467 Query 1630366 GCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGACG 1630425 || |||||| || | || || | | | ||||| |||||| Sbjct 3466 TGCAGGACGCGC------------TCGATGT---CATGACTGTGGATGCCGACGGCGACA 3422 Query 1630426 CGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGGA 1630484 ||||||||||||| || || || ||| | || |||| || | | || |||||| Sbjct 3421 CGCATGAGCATGTGTTGCGGGCGTTCGGCAACCTTGCCGTCGATGCGAAG-CAAGTAGGA 3363 Query 1630485 CCGGCGCATG-GTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGT 1630534 | || || | ||| ||| |||||||||| || |||| || ||||||| Sbjct 3362 GC-GCTCAAGCGTCTTGAAGCCAAAGTAGTTGTAGCCAAAGTCACGGTCGT 3313 Score = 167 bits (184), Expect = 3e-35 Identities = 304/451 (67%), Gaps = 2/451 (0%) Strand=Plus/Minus Query 1628151 GGGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTT 1628210 ||| | ||| ||| || |||||||||||||| ||||| |||| | | || || || || Sbjct 4217 GGGGGCCGAGTACTCGATGATCTCGGTGCACAAGTTGGACGACTTGATGGTGCCGAGATT 4158 Query 1628211 CTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTC 1628270 || |||||| | || ||| |||||||||||| ||||||| |||| |||||||| Sbjct 4157 CTTCTGGTTCGACTTCTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTACCGGTCTC 4098 Query 1628271 GATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGC 1628329 || ||| ||| ||| ||| || |||| | || ||||||| | || | || || | Sbjct 4097 GACCTGGGCCTCGAGGATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCT-TCTTGGCTC 4039 Query 1628330 GGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCA 1628389 |||||| || || |||| ||| |||||| | Sbjct 4038 GGCCCTCCTTCTCGTACTTTTCAAACAAGACGCGGAACTCCTCGCCATAGACCTCGTGGA 3979 Query 1628390 GGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCA 1628449 | || || ||||||| || || || || | |||||| || ||| | | | || || Sbjct 3978 GACCCGGTGCCTCGGCGGGGCAGAACAGGGGCCAGTCACCGGCGGCCTCGACACGCTCCA 3919 Query 1628450 TAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGC 1628509 | ||||| || |||| || ||| | ||||| ||||| || ||| |||||||||| Sbjct 3918 TGAAGAGATCGGGGATCCAGAGCGCGAAGAAGAGATCGCGAGCGCGGACTTCCTCCTTGC 3859 Query 1628510 CGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGC 1628569 |||||||||| |||||||| | || | | |||||||||||||||||| |||||| Sbjct 3858 CGTGGTTCTTGCGAAGGTCGAGGAACTCAAAGACGTCGGCGTGCCACGGCTCGAGGTAGA 3799 Query 1628570 AGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 |||||| || || ||||||| ||| || Sbjct 3798 TGGCAAAAGCCCCGGGGCGCTTGTTGCCACC 3768 Score = 96.9 bits (106), Expect = 4e-14 Identities = 171/247 (69%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCC 1627040 ||| |||||||| |||| ||| || || |||| | | ||||||| ||||||||||| Sbjct 5365 CTGATCGACGGTGAACTTGATCGCACCGACGGCAGCGCGCGTGCGCAAGTAGTACATGCC 5306 Query 1627041 GGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTC-G 1627099 ||||| | || || ||| ||||| |||||||||||||| || | |||| | Sbjct 5305 CGTCTTCAATCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTGCGCCATCGTCGG 5246 Query 1627100 CGTCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCG 1627159 ||| | ||| | ||||||||| || ||||||| ||| | || ||||| | Sbjct 5245 ACTCGAC-AAGTGGATGTTGAGCGATTGCGATTGGTCGATGAAGGCACCTCGGTCGGCGG 5187 Query 1627160 CCATGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGT 1627219 || ||| ||| | | | | | |||||| ||||||||| ||||||||||||| | Sbjct 5186 ACAAGTCAATGATCGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 5127 Query 1627220 CGGGCGG 1627226 | | ||| Sbjct 5126 CAGTCGG 5120 >seq17 Length=1177576 Score = 104 bits (114), Expect = 3e-16 Identities = 154/216 (71%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCG---CGTGC 1254399 || ||| ||| || ||| | | ||||| || || | ||||||||||||||| || | Sbjct 53181 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGTGACGAGA 53240 Query 1254400 CGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | ||| ||||| |||| ||| || || ||||||| | |||| || |||| Sbjct 53241 TGGTCGACTTGCGGTTGTACGAA---GCGAGCTTCGAGGCCTCGCCGGCGATACGCTCGA 53297 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||||||||||||||||| | || ||||| |||||| ||||| || ||||| Sbjct 53298 AGATGTCGTTGACAAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCGGTGTCGG 53357 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATGAACGACG 1254555 |||| || ||||| | ||| ||| | || |||||| Sbjct 53358 GGTGGACTTGCTTCAACACTTTGCTG-TGGACGACG 53392 Score = 104 bits (114), Expect = 3e-16 Identities = 154/216 (71%), Gaps = 7/216 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCG---CGTGC 1254399 || ||| ||| || ||| | | ||||| || || | ||||||||||||||| || | Sbjct 88729 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGTGACGAGA 88670 Query 1254400 CGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | ||| ||||| |||| ||| || || ||||||| | |||| || |||| Sbjct 88669 TGGTCGACTTGCGGTTGTACGAA---GCGAGCTTCGAGGCCTCGCCGGCGATACGCTCGA 88613 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||||||||||||||||| | || ||||| |||||| ||||| || ||||| Sbjct 88612 AGATGTCGTTGACAAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCGGTGTCGG 88553 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATGAACGACG 1254555 |||| || ||||| | ||| ||| | || |||||| Sbjct 88552 GGTGGACTTGCTTCAACACTTTGCTG-TGGACGACG 88518 >seq20 Length=1861728 Score = 93.3 bits (102), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| ||| | | ||||| || || | ||| |||||||| |||| || Sbjct 306388 GCTTGGACAATTCTCCGGGGAGGATCAATCGAACCGAGGTTTGGATCTCACGCGACGAGA 306447 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || || || | |||||| | ||||||| || | Sbjct 306448 TGGTCGACTTGCGGTTGTAGGAA---GCGAGCTTGGACGCCTCGCCGGCGATGCGCTCAA 306504 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||||||||| ||| ||||| Sbjct 306505 AGATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTGGAGATACCCGTGTCGG 306564 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || ||||| | ||| ||| Sbjct 306565 GGTGGACTTGCTTCAACACTTTG 306587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137230447608