Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07-
16] 24 sequences; 23,461,035 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq2 215 8e-50
seq17 114 2e-19
seq20 113 7e-19
>seq2
Length=936589
Score = 215 bits (238), Expect = 8e-50
Identities = 203/259 (78%), Gaps = 0/259 (0%)
Strand=Plus/Minus
Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600
|||||||| ||||| || |||| ||| |||||||||||||||| || | |||||| ||
Sbjct 3766 TGGTCGACGTAGCGTGCGGTGTTGTTGTAGACGCGGAGCATGGGGACGATGCCGTTCGAG 3707
Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660
| |||||| || || || | ||| | ||| | ||||| | ||||| | ||||||
Sbjct 3706 TAGCCGTTCGTCCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAGCCG 3647
Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720
||||| ||||| | ||||||||||||||||||| | || ||||| ||||||||||| |||
Sbjct 3646 ATGCCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTATCGTAGATGCCTTCG 3587
Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780
||||||||| ||||||| | || |||||||||||| |||||| | | ||| |||
Sbjct 3586 ATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGGGGCGTACCG 3527
Query 2073781 GCATTGAAGAGCGTGGGCG 2073799
|| ||||||||||| ||||
Sbjct 3526 GCGTTGAAGAGCGTCGGCG 3508
Score = 187 bits (206), Expect = 4e-41
Identities = 301/439 (69%), Gaps = 0/439 (0%)
Strand=Plus/Minus
Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633
||| || || ||||||||||| ||||| |||| | ||||||| || |||| ||||||
Sbjct 4206 ACTCGATGATCTCGGTGCACAAGTTGGACGACTTGATGGTGCCGAGATTCTTCTGGTTCG 4147
Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693
|| ||| |||||||||||| |||||| |||| ||| ||||||| ||| |||
Sbjct 4146 ACTTCTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGACCTGGGCCT 4087
Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753
|| ||| || |||||| | ||||||| | || || | || |||||||
Sbjct 4086 CGAGGATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCTTCTTGGCTCGGCCCTCCTTCT 4027
Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813
| | | || || | |||| | | |||||| || || || ||||
Sbjct 4026 CGTACTTTTCAAACAAGACGCGGAACTCCTCGCCATAGACCTCGTGGAGACCCGGTGCCT 3967
Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGC 2071873
||| ||||| || || | |||||| ||| | | | | || || ||| || || |||
Sbjct 3966 CGGCGGGGCAGAACAGGGGCCAGTCACCGGCGGCCTCGACACGCTCCATGAAGAGATCGG 3907
Query 2071874 ACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 2071933
|||| || || | ||||||||||| || ||| ||||||||||||||||||||
Sbjct 3906 GGATCCAGAGCGCGAAGAAGAGATCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGC 3847
Query 2071934 TCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 2071993
|||||||| | || | || |||||||||||||||||| |||||| |||||| || |
Sbjct 3846 GAAGGTCGAGGAACTCAAAGACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCCC 3787
Query 2071994 CCTTGCGCTTGCCGCCGCC 2072012
| ||||||| ||| ||
Sbjct 3786 CGGGGCGCTTGTTGCCACC 3768
Score = 105 bits (116), Expect = 1e-16
Identities = 173/242 (71%), Gaps = 8/242 (3%)
Strand=Plus/Minus
Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310
|| |||||||| |||| ||| || | |||||| || ||||||| |||||||||||
Sbjct 5364 TGATCGACGGTGAACTTGATCGCACCGACGGCAGCGCGCGTGCGCAAGTAGTACATGCCC 5305
Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCG 2069368
||||| | || || ||| ||||| |||||||||||||| | || ||| |||
Sbjct 5304 GTCTTCAATCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGA--GTTGCGCCATCGTCG 5247
Query 2069369 G-GACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427
| || || ||| || ||||||||| || ||||||| ||| | ||||||||
Sbjct 5246 GACTCGACA-AGTGGATGTTGAGCGATTGCGATTGGTCGATGAAGGCACCTCGGTCGGCG 5188
Query 2069428 GCCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486
| || ||| ||| || | ||| || | |||||| ||||||||| | | |||||||||
Sbjct 5187 GACAAGTCAATGATC-GTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAG 5129
Query 2069487 AT 2069488
||
Sbjct 5128 AT 5127
Score = 96.9 bits (106), Expect = 5e-14
Identities = 125/172 (73%), Gaps = 3/172 (2%)
Strand=Plus/Plus
Query 796176 GAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGAC 796235
|||||| || ||| |||||| |||||||||||| ||||| || |||||||||||
Sbjct 55960 GAAGCGCTCGACCAAGTTCTCGTTGACGATGCCGTCGGACGCGGCAAAGAAGGCGAGGAC 56019
Query 796236 GTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG---CGAGACCCAGTGGACCGTGTCGGC 796292
|||| ||| |||| ||||||||| |||| | |||||| | | ||||
Sbjct 56020 GTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGTTTGTTGTCCCAGTCGTGCATGTCCTT 56079
Query 796293 GCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTAC 796344
| | ||| | ||| ||||||||||| ||||| || |||||||| ||||||
Sbjct 56080 GGACAAGTCCATCTCTTCGGCGGTCCAGAAGGATGCTTCGGCCTTCTTGTAC 56131
Score = 91.5 bits (100), Expect = 2e-12
Identities = 144/199 (72%), Gaps = 12/199 (6%)
Strand=Plus/Minus
Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAG---GCGACGCGCGCCGGCGC 2070106
||| || |||||||| ||||| ||||| ||| |||||| |||| | || ||||
Sbjct 4517 CGCAGCGTGGTAGATGGTCTCGAAGATC-TGCTTGTTGAGCTTGCGAGCCTCG--GGCGA 4461
Query 2070107 TCTCCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCC 2070164
|| |||||| ||| | | || ||||||||||||| || ||||| |||| |||
Sbjct 4460 G-TCGAACGGCATCGCCA--AGGCCATGAACGCGTCGGCCAACCCTTGCACTCCGATGCC 4404
Query 2070165 CATCGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTC 2070224
|| || |||||||| | ||| |||| | |||||| || ||||||| ||||| |||
Sbjct 4403 GATGGGACGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGGTAGTAGTTGACGTC 4344
Query 2070225 GATCACGCGGTTGAGGTTG 2070243
||| | |||||| | ||||
Sbjct 4343 GATGATGCGGTTCAAGTTG 4325
>seq17
Length=1177576
Score = 114 bits (126), Expect = 2e-19
Identities = 165/230 (72%), Gaps = 12/230 (5%)
Strand=Plus/Plus
Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544
|||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || |
Sbjct 53157 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 53216
Query 1485545 CGGTCTGGATCTCGCGGGTGCCGA-----TCGTGTTGCGCTTGTTAGT-GCGCGCCAGGC 1485598
||||||||||||||| || ||| ||| ||||| |||| | ||| || |
Sbjct 53217 AGGTCTGGATCTCGCG--TGACGAGATGGTCGACTTGCGGTTGTACGAAGCGAGCTTCGA 53274
Query 1485599 GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACA 1485658
|||| ||| | |||| || |||| |||||||||||||||||||| | ||| ||
Sbjct 53275 GGCC----TCGCCGGCGATACGCTCGAAGATGTCGTTGACAAACGAGTTGAGGATGAGCA 53330
Query 1485659 TCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
||| ||||| ||||| || ||||||||| || ||||| | ||| |||
Sbjct 53331 TCGCCTTGTTCGAGATACCGGTGTCGGGGTGGACTTGCTTCAACACTTTG 53380
Score = 114 bits (126), Expect = 2e-19
Identities = 165/230 (72%), Gaps = 12/230 (5%)
Strand=Plus/Minus
Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544
|||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || |
Sbjct 88753 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 88694
Query 1485545 CGGTCTGGATCTCGCGGGTGCCGA-----TCGTGTTGCGCTTGTTAGT-GCGCGCCAGGC 1485598
||||||||||||||| || ||| ||| ||||| |||| | ||| || |
Sbjct 88693 AGGTCTGGATCTCGCG--TGACGAGATGGTCGACTTGCGGTTGTACGAAGCGAGCTTCGA 88636
Query 1485599 GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACA 1485658
|||| ||| | |||| || |||| |||||||||||||||||||| | ||| ||
Sbjct 88635 GGCC----TCGCCGGCGATACGCTCGAAGATGTCGTTGACAAACGAGTTGAGGATGAGCA 88580
Query 1485659 TCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
||| ||||| ||||| || ||||||||| || ||||| | ||| |||
Sbjct 88579 TCGCCTTGTTCGAGATACCGGTGTCGGGGTGGACTTGCTTCAACACTTTG 88530
>seq20
Length=1861728
Score = 113 bits (124), Expect = 7e-19
Identities = 163/227 (72%), Gaps = 6/227 (3%)
Strand=Plus/Plus
Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544
||||||| || || |||| ||||||| ||| || ||| ||| | | ||||| || || |
Sbjct 306364 CCTTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCGGGGAGGATCAATCGAACCG 306423
Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601
||| |||||||| || | ||| || ||||| |||| || ||| || |
Sbjct 306424 AGGTTTGGATCTCACGCGACGAGATGGTCGACTTGCGGTTGT-AGGAAGCG--AGCTTGG 306480
Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661
|||||| | ||||||| || | ||||||||||| |||||||| | ||| |||||
Sbjct 306481 ACGCCTCGCCGGCGATGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 306540
Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
||||||||||| ||| ||||||||| || ||||| | ||| |||
Sbjct 306541 CCTTGTTGGAGATACCCGTGTCGGGGTGGACTTGCTTCAACACTTTG 306587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916243847010536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |