Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 215 8e-50 seq17 114 2e-19 seq20 113 7e-19 >seq2 Length=936589 Score = 215 bits (238), Expect = 8e-50 Identities = 203/259 (78%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| ||||| || |||| ||| |||||||||||||||| || | |||||| || Sbjct 3766 TGGTCGACGTAGCGTGCGGTGTTGTTGTAGACGCGGAGCATGGGGACGATGCCGTTCGAG 3707 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| || || || | ||| | ||| | ||||| | ||||| | |||||| Sbjct 3706 TAGCCGTTCGTCCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAGCCG 3647 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| ||||| | ||||||||||||||||||| | || ||||| ||||||||||| ||| Sbjct 3646 ATGCCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTATCGTAGATGCCTTCG 3587 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||||||| ||||||| | || |||||||||||| |||||| | | ||| ||| Sbjct 3586 ATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGGGGCGTACCG 3527 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||||||||| |||| Sbjct 3526 GCGTTGAAGAGCGTCGGCG 3508 Score = 187 bits (206), Expect = 4e-41 Identities = 301/439 (69%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || ||||||||||| ||||| |||| | ||||||| || |||| |||||| Sbjct 4206 ACTCGATGATCTCGGTGCACAAGTTGGACGACTTGATGGTGCCGAGATTCTTCTGGTTCG 4147 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 || ||| |||||||||||| |||||| |||| ||| ||||||| ||| ||| Sbjct 4146 ACTTCTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGACCTGGGCCT 4087 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || ||| || |||||| | ||||||| | || || | || ||||||| Sbjct 4086 CGAGGATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCTTCTTGGCTCGGCCCTCCTTCT 4027 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 | | | || || | |||| | | |||||| || || || |||| Sbjct 4026 CGTACTTTTCAAACAAGACGCGGAACTCCTCGCCATAGACCTCGTGGAGACCCGGTGCCT 3967 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGC 2071873 ||| ||||| || || | |||||| ||| | | | | || || ||| || || ||| Sbjct 3966 CGGCGGGGCAGAACAGGGGCCAGTCACCGGCGGCCTCGACACGCTCCATGAAGAGATCGG 3907 Query 2071874 ACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 2071933 |||| || || | ||||||||||| || ||| |||||||||||||||||||| Sbjct 3906 GGATCCAGAGCGCGAAGAAGAGATCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGC 3847 Query 2071934 TCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 2071993 |||||||| | || | || |||||||||||||||||| |||||| |||||| || | Sbjct 3846 GAAGGTCGAGGAACTCAAAGACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCCC 3787 Query 2071994 CCTTGCGCTTGCCGCCGCC 2072012 | ||||||| ||| || Sbjct 3786 CGGGGCGCTTGTTGCCACC 3768 Score = 105 bits (116), Expect = 1e-16 Identities = 173/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 || |||||||| |||| ||| || | |||||| || ||||||| ||||||||||| Sbjct 5364 TGATCGACGGTGAACTTGATCGCACCGACGGCAGCGCGCGTGCGCAAGTAGTACATGCCC 5305 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCG 2069368 ||||| | || || ||| ||||| |||||||||||||| | || ||| ||| Sbjct 5304 GTCTTCAATCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGA--GTTGCGCCATCGTCG 5247 Query 2069369 G-GACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 | || || ||| || ||||||||| || ||||||| ||| | |||||||| Sbjct 5246 GACTCGACA-AGTGGATGTTGAGCGATTGCGATTGGTCGATGAAGGCACCTCGGTCGGCG 5188 Query 2069428 GCCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 | || ||| ||| || | ||| || | |||||| ||||||||| | | ||||||||| Sbjct 5187 GACAAGTCAATGATC-GTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAG 5129 Query 2069487 AT 2069488 || Sbjct 5128 AT 5127 Score = 96.9 bits (106), Expect = 5e-14 Identities = 125/172 (73%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 796176 GAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGAC 796235 |||||| || ||| |||||| |||||||||||| ||||| || ||||||||||| Sbjct 55960 GAAGCGCTCGACCAAGTTCTCGTTGACGATGCCGTCGGACGCGGCAAAGAAGGCGAGGAC 56019 Query 796236 GTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG---CGAGACCCAGTGGACCGTGTCGGC 796292 |||| ||| |||| ||||||||| |||| | |||||| | | |||| Sbjct 56020 GTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGTTTGTTGTCCCAGTCGTGCATGTCCTT 56079 Query 796293 GCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTAC 796344 | | ||| | ||| ||||||||||| ||||| || |||||||| |||||| Sbjct 56080 GGACAAGTCCATCTCTTCGGCGGTCCAGAAGGATGCTTCGGCCTTCTTGTAC 56131 Score = 91.5 bits (100), Expect = 2e-12 Identities = 144/199 (72%), Gaps = 12/199 (6%) Strand=Plus/Minus Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAG---GCGACGCGCGCCGGCGC 2070106 ||| || |||||||| ||||| ||||| ||| |||||| |||| | || |||| Sbjct 4517 CGCAGCGTGGTAGATGGTCTCGAAGATC-TGCTTGTTGAGCTTGCGAGCCTCG--GGCGA 4461 Query 2070107 TCTCCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCC 2070164 || |||||| ||| | | || ||||||||||||| || ||||| |||| ||| Sbjct 4460 G-TCGAACGGCATCGCCA--AGGCCATGAACGCGTCGGCCAACCCTTGCACTCCGATGCC 4404 Query 2070165 CATCGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTC 2070224 || || |||||||| | ||| |||| | |||||| || ||||||| ||||| ||| Sbjct 4403 GATGGGACGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGGTAGTAGTTGACGTC 4344 Query 2070225 GATCACGCGGTTGAGGTTG 2070243 ||| | |||||| | |||| Sbjct 4343 GATGATGCGGTTCAAGTTG 4325 >seq17 Length=1177576 Score = 114 bits (126), Expect = 2e-19 Identities = 165/230 (72%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 53157 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 53216 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGA-----TCGTGTTGCGCTTGTTAGT-GCGCGCCAGGC 1485598 ||||||||||||||| || ||| ||| ||||| |||| | ||| || | Sbjct 53217 AGGTCTGGATCTCGCG--TGACGAGATGGTCGACTTGCGGTTGTACGAAGCGAGCTTCGA 53274 Query 1485599 GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACA 1485658 |||| ||| | |||| || |||| |||||||||||||||||||| | ||| || Sbjct 53275 GGCC----TCGCCGGCGATACGCTCGAAGATGTCGTTGACAAACGAGTTGAGGATGAGCA 53330 Query 1485659 TCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| ||||| ||||| || ||||||||| || ||||| | ||| ||| Sbjct 53331 TCGCCTTGTTCGAGATACCGGTGTCGGGGTGGACTTGCTTCAACACTTTG 53380 Score = 114 bits (126), Expect = 2e-19 Identities = 165/230 (72%), Gaps = 12/230 (5%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 88753 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 88694 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGA-----TCGTGTTGCGCTTGTTAGT-GCGCGCCAGGC 1485598 ||||||||||||||| || ||| ||| ||||| |||| | ||| || | Sbjct 88693 AGGTCTGGATCTCGCG--TGACGAGATGGTCGACTTGCGGTTGTACGAAGCGAGCTTCGA 88636 Query 1485599 GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACA 1485658 |||| ||| | |||| || |||| |||||||||||||||||||| | ||| || Sbjct 88635 GGCC----TCGCCGGCGATACGCTCGAAGATGTCGTTGACAAACGAGTTGAGGATGAGCA 88580 Query 1485659 TCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| ||||| ||||| || ||||||||| || ||||| | ||| ||| Sbjct 88579 TCGCCTTGTTCGAGATACCGGTGTCGGGGTGGACTTGCTTCAACACTTTG 88530 >seq20 Length=1861728 Score = 113 bits (124), Expect = 7e-19 Identities = 163/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| || || |||| ||||||| ||| || ||| ||| | | ||||| || || | Sbjct 306364 CCTTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCGGGGAGGATCAATCGAACCG 306423 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||| |||||||| || | ||| || ||||| |||| || ||| || | Sbjct 306424 AGGTTTGGATCTCACGCGACGAGATGGTCGACTTGCGGTTGT-AGGAAGCG--AGCTTGG 306480 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||||||| || | ||||||||||| |||||||| | ||| ||||| Sbjct 306481 ACGCCTCGCCGGCGATGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 306540 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||||||||| ||| ||||||||| || ||||| | ||| ||| Sbjct 306541 CCTTGTTGGAGATACCCGTGTCGGGGTGGACTTGCTTCAACACTTTG 306587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916243847010536