Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq23 104 6e-17 seq1 104 6e-17 seq10 91.5 3e-13 seq13 86.0 1e-11 >seq23 Length=1006473 Score = 104 bits (114), Expect = 6e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || |||||||| | || || || || ||||| |||| Sbjct 106417 CAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAA 106476 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || ||||| || ||| ||| ||| || | ||||| Sbjct 106477 CGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCAACGATTGATCTT 106536 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| | || ||||| | |||||||||||||||||| |||| || ||||| Sbjct 106537 CGCCGGCAAGCAGCTCGAGGATGGCCGCACTTTGGCCGATTACAACATCCAAAAGGAGTC 106596 Query 206364 TACTCTTCAC 206373 || || ||| Sbjct 106597 GACCCTCCAC 106606 >seq1 Length=554179 Score = 104 bits (114), Expect = 6e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || ||||| | || || || ||| ||||| |||| Sbjct 255505 CAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACGATCGACAA 255564 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || ||| ||||| || ||||| || ||| ||| ||| | || |||| Sbjct 255565 CGTCAAAGCCAA-GATCCAAGACAAGGAAGGCATCCCGCCCGACCAACAACGTCTCATCT 255623 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 ||||||| |||||| | || ||||| | || |||||||| |||||| |||| || |||| Sbjct 255624 TCGCCGGCAAGCAGCTCGAGGATGGTCGCACCTTGGCCGACTACAACATCCAAAAGGAGT 255683 Query 206363 CTACTCTTCAC 206373 | || |||||| Sbjct 255684 CGACCCTTCAC 255694 >seq10 Length=1653987 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| || ||| ||| |||| ||||||||||| ||| Sbjct 1138287 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAACGACTCATCTTCGCCGGCAAG 1138228 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | ||||| || | ||| | ||||| |||||| ||||||| ||||| || |||||| Sbjct 1138227 CAGCTCGAAGACGGTCGCACTCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTTCAC 1138168 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| || ||| ||| |||| ||||||||||| ||| Sbjct 1138515 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAACGACTCATCTTCGCCGGCAAG 1138456 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | ||||| || | ||| | ||||| |||||| ||||||| ||||| || || || Sbjct 1138455 CAGCTCGAAGACGGTCGCACTCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTCCAT 1138396 Query 206374 CTTGT 206378 || || Sbjct 1138395 CTCGT 1138391 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| || ||| ||| |||| ||||||||||| ||| Sbjct 1138743 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAACGACTCATCTTCGCCGGCAAG 1138684 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | ||||| || | ||| | ||||| |||||| ||||||| ||||| || || || Sbjct 1138683 CAGCTCGAAGACGGTCGCACTCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTCCAT 1138624 Query 206374 CTTGT 206378 || || Sbjct 1138623 CTCGT 1138619 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| || ||| ||| |||| ||||||||||| ||| Sbjct 1138971 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAACGACTCATCTTCGCCGGCAAG 1138912 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | ||||| || | ||| | ||||| |||||| ||||||| ||||| || || || Sbjct 1138911 CAGCTCGAAGACGGTCGCACTCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTCCAT 1138852 Query 206374 CTTGT 206378 || || Sbjct 1138851 CTCGT 1138847 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| || ||| ||| |||| ||||||||||| ||| Sbjct 1139199 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAACGACTCATCTTCGCCGGCAAG 1139140 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | ||||| || | ||| | ||||| |||||| ||||||| ||||| || || || Sbjct 1139139 CAGCTCGAAGACGGTCGCACTCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTCCAT 1139080 Query 206374 CTTGT 206378 || || Sbjct 1139079 CTCGT 1139075 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| || ||| ||| |||| ||||||||||| ||| Sbjct 1139654 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAACGACTCATCTTCGCCGGCAAG 1139595 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | ||||| || | ||| | ||||| |||||| ||||||| ||||| || || || Sbjct 1139594 CAGCTCGAAGACGGTCGCACTCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTCCAT 1139535 Query 206374 CTTGT 206378 || || Sbjct 1139534 CTCGT 1139530 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| || ||| ||| |||| ||||||||||| ||| Sbjct 1139882 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAACGACTCATCTTCGCCGGCAAG 1139823 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | ||||| || | ||| | ||||| |||||| ||||||| ||||| || || || Sbjct 1139822 CAGCTCGAAGACGGTCGCACTCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTCCAT 1139763 Query 206374 CTTGT 206378 || || Sbjct 1139762 CTCGT 1139758 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| || ||| ||| |||| ||||||||||| ||| Sbjct 1140110 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAACGACTCATCTTCGCCGGCAAG 1140051 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | ||||| || | ||| | ||||| |||||| ||||||| ||||| || || || Sbjct 1140050 CAGCTCGAAGACGGTCGCACTCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTCCAT 1139991 Query 206374 CTTGT 206378 || || Sbjct 1139990 CTCGT 1139986 >seq13 Length=1203898 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| || ||| ||| |||| ||||||||||| ||| Sbjct 755737 AAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAACGACTCATCTTCGCCGGCAAG 755796 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | |||||||| | || ||||| |||||| ||||||| ||||| || |||||| Sbjct 755797 CAGCTCGAAGATGGTCGCACCCGAGCCGACTACAACATCCAGAAGGAGTCCACCCTTCAC 755856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820436590104