Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 205 1e-46 seq17 105 1e-16 seq20 100 4e-15 >seq2 Length=936589 Score = 205 bits (226), Expect = 1e-46 Identities = 218/288 (76%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| ||| | |||||| || |||| |||||||| || ||||| ||||| | Sbjct 3479 CATGTCCGAGCGCTACTTCACCCACGCCTCGCCGACGCTCTTCAACGCCGGTACGCCCCA 3538 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 ||||||| ||||||||||| || | ||||||| ||| |||||||| |||||||| Sbjct 3539 CCCGCAGCTCTCGTCGTGCTTCTTGGTCACGATGAAGGACGACTCGATCGAAGGCATCTA 3598 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 || ||||||||| ||||||||||||||||||| | ||||| |||||||| || | Sbjct 3599 CGATACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGCATCGGCTTGAGCAT 3658 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| | ||||| | ||| | ||| | || || || |||||| | || |||||| | Sbjct 3659 CCACAACATCCGCGCGACCGGCTCGTACATCGCCGGGACGAACGGCTACTCGAACGGCAT 3718 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 || |||||||| ||||| | ||| |||| || |||||||||||||| Sbjct 3719 CGTCCCCATGCTCCGCGTCTACAACAACACCGCACGCTACGTCGACCA 3766 Score = 132 bits (146), Expect = 7e-25 Identities = 305/463 (66%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| || || |||||| |||||| || ||||||||||||||| || Sbjct 3768 GGTGGCAACAAGCGCCCCGGGGCTTTTGCCATCTACCTCGAGCCGTGGCACGCCGACGTC 3827 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | || ||||| |||||||||||||| |||| ||| |||| ||| Sbjct 3828 TTTGAGTTCCTCGACCTTCGCAAGAACCACGGCAA-GGAG-----GAAGTCCGCGCTCGC 3881 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| | || || |||| ||| || || ||| || | | | ||| | | Sbjct 3882 GATCTCTTCTTCGCGCTCTGGATCCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGT 3941 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 |||||| | || || ||||| ||||||| || || || ||||| |||||||| || Sbjct 3942 GACTGGCCCCTGTTCTGCCCCGCCGAGGCACCGGGTCTCCACGAGGTCTATGGCGAGGAG 4001 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCG-TGCCCGC 262086 || || | | | ||| | || | || | ||||| Sbjct 4002 TTCCGCGTCTTGTTTGAAAAGTACGAGAAGGAGGGCCGAGCCAAGA-AGACGATCCCCGC 4060 Query 262087 ACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGT 262146 | | || | |||| || || ||| |||||| |||||||||| | |||| |||| | Sbjct 4061 GCAAAAGCTTTGGTACGCGATCCTCGAGGCCCAGGTCGAGACCGGTAACCCCTTCATGCT 4120 Query 262147 CTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC 262206 |||||||||||||| ||| || |||||| |||| || ||||||| | | | Sbjct 4121 CTACAAGGACGCCGCGAACAAGAAGTCGAACCAGAAGAATCTCGGCACCATCAAGTCGTC 4180 Query 262207 CAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAG 262249 |||| |||||||||||||| || ||| ||| | ||| |||| Sbjct 4181 CAACTTGTGCACCGAGATCATCGAGTACTCGGCCCCCGACGAG 4223 Score = 95.1 bits (104), Expect = 2e-13 Identities = 174/251 (69%), Gaps = 8/251 (3%) Strand=Plus/Plus Query 263167 CCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATT 263226 ||| | ||||||||||| ||| ||||||||| |||||| | | | | || |||| Sbjct 5120 CCGACTGATCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACGATCATT 5179 Query 263227 GATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTC 263286 || || | |||||||| | ||| ||||||| || ||||||||| | || | Sbjct 5180 GACTTGTCCGCCGACCGAGGTGCCTTCATCGACCAATCGCAATCGCTCAACATCCACTT- 5238 Query 263287 GCCGAC-CCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCT 263345 | ||| |||||| | | |||||||||||||| ||| | ||| || || | Sbjct 5239 GTCGAGTCCGACGATGGCGCAACTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGATT 5298 Query 263346 CAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAAC---GCCATTCAATTCAC 263402 ||||| ||||||||||| ||||||| || ||||||| | || || | ||||| Sbjct 5299 GAAGACGGGCATGTACTACTTGCGCAC---GCGCGCTGCCGTCGGTGCGATCAAGTTCAC 5355 Query 263403 CGTCGATCAGG 263413 ||||||||||| Sbjct 5356 CGTCGATCAGG 5366 >seq17 Length=1177576 Score = 105 bits (116), Expect = 1e-16 Identities = 164/229 (72%), Gaps = 14/229 (6%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||| ||| | ||||| || |||||| |||| | ||| || |||||| | ||| Sbjct 53380 CAAAGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 53327 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 ||| | |||||||||||||||||||| |||| || |||| | ||||||| ||| Sbjct 53326 CATCCTCAACTCGTTTGTCAACGACATCTTCGAGCGTATCGCCGGCGAGGCC--TCGAA- 53270 Query 725036 GGCGCGCTCCA-ACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCCGTGC 725091 || |||| | |||| ||||| ||| | | || ||||||||||||||| | || | Sbjct 53269 -GCTCGCTTCGTACAACCGCAAGTCGACCATCTCGTCACGCGAGATCCAGACCTCGGTCC 53211 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 53210 GATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 53162 Score = 105 bits (116), Expect = 1e-16 Identities = 164/229 (72%), Gaps = 14/229 (6%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||| ||| | ||||| || |||||| |||| | ||| || |||||| | ||| Sbjct 88530 CAAAGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 88583 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 ||| | |||||||||||||||||||| |||| || |||| | ||||||| ||| Sbjct 88584 CATCCTCAACTCGTTTGTCAACGACATCTTCGAGCGTATCGCCGGCGAGGCC--TCGAA- 88640 Query 725036 GGCGCGCTCCA-ACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCCGTGC 725091 || |||| | |||| ||||| ||| | | || ||||||||||||||| | || | Sbjct 88641 -GCTCGCTTCGTACAACCGCAAGTCGACCATCTCGTCACGCGAGATCCAGACCTCGGTCC 88699 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 88700 GATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 88748 >seq20 Length=1861728 Score = 100 bits (110), Expect = 4e-15 Identities = 138/189 (73%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||||||||| | ||| ||| | |||||||| ||||||||||| | || ||||||| Sbjct 306551 CTCCAACAAGGCGATGCTCATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCGC 306492 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGC-TCCAACAAGCGCAA---CACGATCGGCACGCGCG 725073 | |||||| || || || ||| ||| |||| ||||| || ||| |||| | Sbjct 306491 CGGCGAGGC--GT--CCAAGCTCGCTTCCTACAACCGCAAGTCGACCATCTCGTCGCGTG 306436 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 ||||||| ||| | || || ||||| | | ||| ||| || ||| ||||||| |||| | Sbjct 306435 AGATCCAAACCTCGGTTCGATTGATCCTCCCCGGAGAATTGTCCAAGCACGCCATCTCGG 306376 Query 725134 AGGGCACCA 725142 | ||||||| Sbjct 306375 AAGGCACCA 306367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808885155888