Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07-
16] 24 sequences; 23,461,035 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq2 205 1e-46
seq17 105 1e-16
seq20 100 4e-15
>seq2
Length=936589
Score = 205 bits (226), Expect = 1e-46
Identities = 218/288 (76%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953
|||||| ||| | |||||| || |||| |||||||| || ||||| ||||| |
Sbjct 3479 CATGTCCGAGCGCTACTTCACCCACGCCTCGCCGACGCTCTTCAACGCCGGTACGCCCCA 3538
Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013
||||||| ||||||||||| || | ||||||| ||| |||||||| ||||||||
Sbjct 3539 CCCGCAGCTCTCGTCGTGCTTCTTGGTCACGATGAAGGACGACTCGATCGAAGGCATCTA 3598
Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073
|| ||||||||| ||||||||||||||||||| | ||||| |||||||| || |
Sbjct 3599 CGATACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGCATCGGCTTGAGCAT 3658
Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133
||||| | ||||| | ||| | ||| | || || || |||||| | || |||||| |
Sbjct 3659 CCACAACATCCGCGCGACCGGCTCGTACATCGCCGGGACGAACGGCTACTCGAACGGCAT 3718
Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181
|| |||||||| ||||| | ||| |||| || ||||||||||||||
Sbjct 3719 CGTCCCCATGCTCCGCGTCTACAACAACACCGCACGCTACGTCGACCA 3766
Score = 132 bits (146), Expect = 7e-25
Identities = 305/463 (66%), Gaps = 8/463 (2%)
Strand=Plus/Plus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| ||| ||||||| || || |||||| |||||| || ||||||||||||||| ||
Sbjct 3768 GGTGGCAACAAGCGCCCCGGGGCTTTTGCCATCTACCTCGAGCCGTGGCACGCCGACGTC 3827
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
| | | || ||||| |||||||||||||| |||| ||| |||| |||
Sbjct 3828 TTTGAGTTCCTCGACCTTCGCAAGAACCACGGCAA-GGAG-----GAAGTCCGCGCTCGC 3881
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967
|||||||| | || || |||| ||| || || ||| || | | | ||| | |
Sbjct 3882 GATCTCTTCTTCGCGCTCTGGATCCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGT 3941
Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027
|||||| | || || ||||| ||||||| || || || ||||| |||||||| ||
Sbjct 3942 GACTGGCCCCTGTTCTGCCCCGCCGAGGCACCGGGTCTCCACGAGGTCTATGGCGAGGAG 4001
Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCG-TGCCCGC 262086
|| || | | | ||| | || | || | |||||
Sbjct 4002 TTCCGCGTCTTGTTTGAAAAGTACGAGAAGGAGGGCCGAGCCAAGA-AGACGATCCCCGC 4060
Query 262087 ACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGT 262146
| | || | |||| || || ||| |||||| |||||||||| | |||| |||| |
Sbjct 4061 GCAAAAGCTTTGGTACGCGATCCTCGAGGCCCAGGTCGAGACCGGTAACCCCTTCATGCT 4120
Query 262147 CTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC 262206
|||||||||||||| ||| || |||||| |||| || ||||||| | | |
Sbjct 4121 CTACAAGGACGCCGCGAACAAGAAGTCGAACCAGAAGAATCTCGGCACCATCAAGTCGTC 4180
Query 262207 CAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAG 262249
|||| |||||||||||||| || ||| ||| | ||| ||||
Sbjct 4181 CAACTTGTGCACCGAGATCATCGAGTACTCGGCCCCCGACGAG 4223
Score = 95.1 bits (104), Expect = 2e-13
Identities = 174/251 (69%), Gaps = 8/251 (3%)
Strand=Plus/Plus
Query 263167 CCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATT 263226
||| | ||||||||||| ||| ||||||||| |||||| | | | | || ||||
Sbjct 5120 CCGACTGATCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACGATCATT 5179
Query 263227 GATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTC 263286
|| || | |||||||| | ||| ||||||| || ||||||||| | || |
Sbjct 5180 GACTTGTCCGCCGACCGAGGTGCCTTCATCGACCAATCGCAATCGCTCAACATCCACTT- 5238
Query 263287 GCCGAC-CCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCT 263345
| ||| |||||| | | |||||||||||||| ||| | ||| || || |
Sbjct 5239 GTCGAGTCCGACGATGGCGCAACTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGATT 5298
Query 263346 CAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAAC---GCCATTCAATTCAC 263402
||||| ||||||||||| ||||||| || ||||||| | || || | |||||
Sbjct 5299 GAAGACGGGCATGTACTACTTGCGCAC---GCGCGCTGCCGTCGGTGCGATCAAGTTCAC 5355
Query 263403 CGTCGATCAGG 263413
|||||||||||
Sbjct 5356 CGTCGATCAGG 5366
>seq17
Length=1177576
Score = 105 bits (116), Expect = 1e-16
Identities = 164/229 (72%), Gaps = 14/229 (6%)
Strand=Plus/Minus
Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975
||| ||| | ||||| || |||||| |||| | ||| || |||||| | |||
Sbjct 53380 CAAAGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 53327
Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035
||| | |||||||||||||||||||| |||| || |||| | ||||||| |||
Sbjct 53326 CATCCTCAACTCGTTTGTCAACGACATCTTCGAGCGTATCGCCGGCGAGGCC--TCGAA- 53270
Query 725036 GGCGCGCTCCA-ACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCCGTGC 725091
|| |||| | |||| ||||| ||| | | || ||||||||||||||| | || |
Sbjct 53269 -GCTCGCTTCGTACAACCGCAAGTCGACCATCTCGTCACGCGAGATCCAGACCTCGGTCC 53211
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
| ||||| | | ||| || ||| ||| ||||||| |||| || |||||
Sbjct 53210 GATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 53162
Score = 105 bits (116), Expect = 1e-16
Identities = 164/229 (72%), Gaps = 14/229 (6%)
Strand=Plus/Plus
Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975
||| ||| | ||||| || |||||| |||| | ||| || |||||| | |||
Sbjct 88530 CAAAGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 88583
Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035
||| | |||||||||||||||||||| |||| || |||| | ||||||| |||
Sbjct 88584 CATCCTCAACTCGTTTGTCAACGACATCTTCGAGCGTATCGCCGGCGAGGCC--TCGAA- 88640
Query 725036 GGCGCGCTCCA-ACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCCGTGC 725091
|| |||| | |||| ||||| ||| | | || ||||||||||||||| | || |
Sbjct 88641 -GCTCGCTTCGTACAACCGCAAGTCGACCATCTCGTCACGCGAGATCCAGACCTCGGTCC 88699
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
| ||||| | | ||| || ||| ||| ||||||| |||| || |||||
Sbjct 88700 GATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 88748
>seq20
Length=1861728
Score = 100 bits (110), Expect = 4e-15
Identities = 138/189 (73%), Gaps = 8/189 (4%)
Strand=Plus/Minus
Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017
|||||||||| | ||| ||| | |||||||| ||||||||||| | || |||||||
Sbjct 306551 CTCCAACAAGGCGATGCTCATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCGC 306492
Query 725018 CACCGAGGCCGGTCGCCTGGCGCGC-TCCAACAAGCGCAA---CACGATCGGCACGCGCG 725073
| |||||| || || || ||| ||| |||| ||||| || ||| |||| |
Sbjct 306491 CGGCGAGGC--GT--CCAAGCTCGCTTCCTACAACCGCAAGTCGACCATCTCGTCGCGTG 306436
Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133
||||||| ||| | || || ||||| | | ||| ||| || ||| ||||||| |||| |
Sbjct 306435 AGATCCAAACCTCGGTTCGATTGATCCTCCCCGGAGAATTGTCCAAGCACGCCATCTCGG 306376
Query 725134 AGGGCACCA 725142
| |||||||
Sbjct 306375 AAGGCACCA 306367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177808885155888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |