Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07-
16] 24 sequences; 23,461,035 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq10 129 5e-25
seq23 116 3e-21
seq1 91.5 1e-13
>seq10
Length=1653987
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | ||| || | ||| | || ||||||||| ||||||||||| ||
Sbjct 915064 CCACCACGCAGGCGCAAGACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCA 915123
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || || |||||||| || || || ||||| |||||||| || | |||
Sbjct 915124 AGCGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAATCGCTGCTGATCAGGAGGG 915183
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| || ||||||||| ||||| ||| | |||| | | |||||| ||||| ||
Sbjct 915184 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGATTCGAC 915242
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||| | ||||||||| ||||| ||||| || || ||||| ||||||||
Sbjct 915243 CTCGAGCGTGATCGTCTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 915290
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | ||| || | ||| | || ||||||||| ||||||||||| ||
Sbjct 915292 CCACCACGCAGGCGCAAGACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCA 915351
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || || ||||| || |||||||| || | ||||| ||||| | |||
Sbjct 915352 AGCGTACGGCCATCCTCGAGCTGTTTGCCCGCAAAGATGAGACGCTGTTGGTCGGGGGGA 915411
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||||||| ||||| || | | | | | |||||| || || |||
Sbjct 915412 ATACCCTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATCGTGTCCGATGACTCGACC 915471
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || ||||| | ||| || ||||| || |||||
Sbjct 915472 TCGAGGGTGATGGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGCAT 915518
>seq23
Length=1006473
Score = 116 bits (128), Expect = 3e-21
Identities = 142/191 (74%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||||||||| ||||||||||||||||| || || | || || |||||||| || || ||
Sbjct 106594 CTCCTTTTGGATGTTGTAATCGGCCAAAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 106535
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| || |||||||| | || | || |||||||| |||||| ||| | ||
Sbjct 106534 GATCAATCGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 106476
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | ||||||| ||| || ||||| | |||||||| || ||||| | ||| || |
Sbjct 106475 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGA 106416
Query 35724 CAAATATCTGC 35734
| || || |||
Sbjct 106415 CGAAGATTTGC 106405
>seq1
Length=554179
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||||||||| |||||||| ||||||||||| || | || || |||||||| || || ||
Sbjct 255682 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAA 255623
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | || || ||||| | || | || |||||||| |||| || |||| ||
Sbjct 255622 GATGAGACGTTGTTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATC-TTGGCTTTGACGT 255564
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | ||||||| || || ||||| | ||||| || || ||||| | || || |
Sbjct 255563 TGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 255504
Query 35724 CAAATATCTGCA 35735
| || || ||||
Sbjct 255503 CGAAGATTTGCA 255492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793464761920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |