Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 192 7e-44 seq8 122 1e-22 >seq2 Length=936589 Score = 192 bits (212), Expect = 7e-44 Identities = 561/856 (66%), Gaps = 11/856 (1%) Strand=Plus/Minus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 ||||| || ||||| |||||||| || ||| || | | |||||| | || || Sbjct 4252 GCGATCGAGGCCAAGTTGCAAACGGCGCACTCGTCGGGGGCCGAGTACTCGATGATCTCG 4193 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || |||||||| ||| || || || | |||||| ||||| ||||||||| Sbjct 4192 GTGCACAAGTTGGACGACTTGATGGTGCCGAGATTCTTCTGGTTCGACTTCTTGTTCGCG 4133 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 || ||||||||||||||| |||| | || ||||| ||| | | ||| || || | | Sbjct 4132 GCGTCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGACCTGGGCCTCGAGGATCGCGTAC 4073 Query 111416 CAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 111474 |||| | | || || || | | ||||| || |||||| |||||||||| | Sbjct 4072 CAAAGCTTTTGC-GCGGGGATCGTCTTCTTGGCTCGGCCCTCCTTCTCGTACTTTTCAAA 4014 Query 111475 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 111534 | | | |||||||| || | ||| |||||| ||||||| | | || ||||| Sbjct 4013 CAAGACGCGGAACTCCTCGCCATAGACCTCGTGGAGACCCGGTGCCTCGGCGGGGCAGAA 3954 Query 111535 AAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 111594 || | ||| | ||| | |||| || |||| |||||| || || || ||||| || | Sbjct 3953 CAGGGGCCAGTCACCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGGATCCAGAGCGC 3894 Query 111595 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 111654 | |||||||| | | || | || || | || ||||| || | || ||||| Sbjct 3893 GAAGAAGAGATCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAA 3834 Query 111655 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGAC 111710 ||| | || || |||||||| ||||| || |||| || | || || | | | Sbjct 3833 CTCAAAGACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAAGCCCCGGGGCGCTTGTT 3774 Query 111711 GCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATAC 111770 | ||| |||| | || ||||| || ||| ||| | ||||| ||||| || | || | Sbjct 3773 G-CCACCTTGGTCGACGTAGCGTGCGGTGTTGTTGTAGACGCGGAGCATGGGGACGATGC 3715 Query 111771 CATCTGATTGACCATTTGTCCC-CCGA-ATACGAGATTTATTGGCTCTCACATCATGGAT 111828 | | || | || || ||||| ||| |||||| | || | | | ||||| Sbjct 3714 CGTTCGAGTAGCCGTTCGTCCCGGCGATGTACGAG--CCGGTCGCGCGGATGTTGTGGAT 3657 Query 111829 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 111888 | || || || || || || ||| ||||| |||| ||| | | || || | || Sbjct 3656 GCTCAAGCCGATGCCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTATCGTA 3597 Query 111889 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 111948 ||| || | ||| ||||| ||||| | | || | |||||| || | |||||| Sbjct 3596 GATGCCTTCGATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTG 3537 Query 111949 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 112008 || ||||| || |||||||| || || | ||||| |||| | | |||||| Sbjct 3536 GGGCGTACCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAG 3477 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 || ||| | || || ||| || ||||| | | ||||||||||| ||||| ||||| Sbjct 3476 GTTGTACGACTGCAGGACGCGCTCGATGTCATGACTGTGGATGCCGACGGCGACACGCAT 3417 Query 112069 GAACATGTACTGTGGG 112084 || ||||| || ||| Sbjct 3416 GAGCATGTGTTGCGGG 3401 Score = 100 bits (110), Expect = 4e-16 Identities = 222/328 (68%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 9156 CGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAAC 9215 ||| |||| |||||||| |||| ||| ||| || ||||| ||| | || || | Sbjct 330146 CGCTTCTACCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 330087 Query 9216 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 9275 ||| ||| ||||||||||| |||||| ||||| || | ||| | || ||| Sbjct 330086 GAGACGACCCCCTTCTACCCTCGCTCGCCTTACGGTGTTGCCAAGTTGTACGCCTTCTGG 330027 Query 9276 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 9335 | ||||| || ||||||||||| |||| ||| |||||| ||| |||||||||||| Sbjct 330026 ATTGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAAC 329967 Query 9336 CATGAATCACCGAGACGAGG-TGCAGACTTTGTGACCATGAAGAT-TACCGAGGGTATCA 9393 || || || || | || || ||| ||| || || | |||||| | ||| | | || Sbjct 329966 CACGAGTCCCCCCGTCGTGGCCGCA-CCTTCGTCACGAGGAAGATCTCGCGA-GCTGTCG 329909 Query 9394 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 9453 | ||| | ||| || |||| | | || | | || ||||| | || || | | Sbjct 329908 CCGAGATCTCGCTCGGTCAACAGGACTGCCTTTACCTCGGCAACATGGAGGCCAAGCGTG 329849 Query 9454 ATTGGGGTCACGCGAAGGACTATGTTGA 9481 ||||||| ||||| ||||| ||||| Sbjct 329848 ATTGGGGACACGCCCGTGACTACGTTGA 329821 >seq8 Length=1461820 Score = 122 bits (134), Expect = 1e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 9160 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 9219 ||||||||||||| |||| ||| ||||||| ||||| ||| | || ||| |||| Sbjct 1423761 TCTATCAAGCCTCGACCTCCGAGTTGTTTGGCAAGGTCTTCGAGACTCCTCAATCTGAGG 1423702 Query 9220 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 9279 |||| |||||| |||| || ||| ||||| ||| | ||| | || ||| ||| Sbjct 1423701 AGACGCCCTTCCACCCTCGTTCGCCTTACGGTGTCGCCAAGTTGTACGCGTTCTGGATCG 1423642 Query 9280 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 9339 |||| || |||||||||||||||| ||| |||||| ||| |||||||||||||| | Sbjct 1423641 TCAAGAACTACCGCGAGTCTTACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACG 1423582 Query 9340 AATCACC 9346 | || || Sbjct 1423581 AGTCCCC 1423575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031811590400