Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 223 4e-53 seq6 123 3e-23 seq8 111 2e-19 >seq2 Length=936589 Score = 223 bits (246), Expect = 4e-53 Identities = 548/819 (67%), Gaps = 18/819 (2%) Strand=Plus/Minus Query 118754 GTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 118813 |||||| || || || ||||||||||| || ||| |||||||| | ||||| || || Sbjct 4208 GTACTCGATGATCTCGGTGCACAAGTTGGACGACTTGATGGTGCCGAGATTCTTCTGGTT 4149 Query 118814 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 118873 ||||| |||| || |||||||| |||||| | || | || ||||| |||| Sbjct 4148 CGACTTCTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGACCTGGGC 4089 Query 118874 CTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTT 118932 || ||| || || | ||| | | | || || || | || |||||||| ||||| | Sbjct 4088 CTCGAGGATCGCGTACCAAAGCTTTTGC-GCGGGGATCGTCTTCTTGGCTCGGCCCTCCT 4030 Query 118933 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTG 118992 |||||||||| | | | | ||||| || || | |||| ||| || |||| Sbjct 4029 TCTCGTACTTTTCAAACAAGACGCGGAACTCCTCGCCATAGACCTCGTGGAGACCCGGTG 3970 Query 118993 CCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 119052 ||| | |||||||| || | ||| | ||| | |||| || |||| ||||||||| | Sbjct 3969 CCTCGGCGGGGCAGAACAGGGGCCAGTCACCGGCGGCCTCGACACGCTCCATGAAGAGAT 3910 Query 119053 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 119112 | |||||||||||||| |||||||||| ||| ||| |||| || | || || || Sbjct 3909 CGGGGATCCAGAGCGCGAAGAAGAGATCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCT 3850 Query 119113 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 119172 || | || | || || | || || ||||||||||| || ||||| | || | | Sbjct 3849 TGCGAAGGTCGAGGAACTCAAAGACGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAAG 3790 Query 119173 ACCC------CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACAC 119226 ||| ||| | | ||| | |||| || || | || ||| ||| | || | Sbjct 3789 CCCCGGGGCGCTT--GTTG-CCACCTTGGTCGACGTAGCGTGCGGTGTTGTTGTAGACGC 3733 Query 119227 GAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCC-CCGA-ATACGAGACTTATT 119284 | ||||| || | ||| || | || | ||| || ||||| ||| |||||| | | Sbjct 3732 GGAGCATGGGGACGATGCCGTTCGAGTAGCCGTTCGTCCCGGCGATGTACGAGCC--GGT 3675 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 || | || | ||||||| || || || || || || ||| ||||| ||||||| Sbjct 3674 CGCGCGGATGTTGTGGATGCTCAAGCCGATGCCACCGGCGGTCTTGGAGATGAGCGCGCA 3615 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 | | |||| | ||||||| || ||||||||||| |||| | | || | |||||| Sbjct 3614 CGTCTTGAGCGTATCGTAGATGCCTTCGATCGAGTCGTCCTTCATCGTGACCAAGAAGCA 3555 Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 ||| | || || ||| ||||| ||||||||||| || || | |||||| |||| Sbjct 3554 CGACGAGAGCTGCGGGTGGGGCGTACCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAA 3495 Query 119465 CATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACG-GCGGGAATGTCTTCCCCGTGAA 119523 | | |||||| || ||| | || || |||| || | ||||| | | ||| | Sbjct 3494 GTAGCGCTCGGACATGAGGTTGTACGACTGCAGGACGCGCTCG-ATGTCATGACTGTGGA 3436 Query 119524 TACCGATCGAGACCCGCATAAACATGTATTG-GGGTGTT 119561 | |||| | ||| ||||| | ||||| ||| ||| ||| Sbjct 3435 TGCCGACGGCGACACGCATGAGCATGTGTTGCGGGCGTT 3397 >seq6 Length=2534666 Score = 123 bits (136), Expect = 3e-23 Identities = 281/415 (68%), Gaps = 12/415 (3%) Strand=Plus/Minus Query 179767 TTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAGC 179826 |||| ||| |||||||| ||||| || ||||||| |||| ||| | ||| ||||| ||| Sbjct 1950989 TTGATGATTAGACCCTTGATGTGAGATCCATCGTGATCCTGATCGGCCATGATCATGAGC 1950930 Query 179827 CGACCATAGCGAAGCTCGGAAACATCTTGATAATCCTTACCTTGTTGAAGACCCAAGATC 179886 ||||| || ||| | || || || |||| || || || |||||||| || Sbjct 1950929 TTGCCATAACGGAGCGAGTCGACGTCGGTGTACACCTTGCCCTGCTGCAGACCCAAAATT 1950870 Query 179887 TTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCA---CTGAAGCATCTCGG 179943 | ||||| | | || ||| | ||| | || |||| | | || || || Sbjct 1950869 TGCTTGATCGCTTGGATCTCA-GCATTGTCG--AGCAACGCCTTGCCCGCGGCTTCGCGC 1950813 Query 179944 ACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAG 180003 || || ||||||| || |||||||| ||||| |||| || ||||| || || || Sbjct 1950812 ACGTTGAGCAACTTCCCTCGCAGAGGGAAAACACCATAGTTGTCTCGACCGACGACGGAC 1950753 Query 180004 AGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTT 180063 ||||| | || ||||| | ||| |||||||| || || |||| ||||||||| || || Sbjct 1950752 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCAGTCAAGATGAGCGTGCAATTC 1950693 Query 180064 --CCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGGAATACCAGTAATTT 180121 || | | | ||| || || |||||||| || |||| |||| | ||| || || Sbjct 1950692 GACCCGTTCCT--CGTTCCAGCGTTGTTCGCATCTTCCAGCTTGACCAAACCCGTGATAC 1950635 Query 180122 TGGACTTACGAGCG-CCATCTGTCTTCTTGAGTTCCTTCATCTCCTTGAACTTGG 180175 || | | | | ||||| ||||||||||| || || ||||||||||| Sbjct 1950634 GCGA-TCGCTTGTGTCCATCGGTCTTCTTGAGCATCTGGTCCTGCTTGAACTTGG 1950581 >seq8 Length=1461820 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 11802 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 11861 |||||||| || |||| ||| ||||||| || || || | || ||| ||||||| Sbjct 1423759 TATCAAGCCTCGACCTCCGAGTTGTTTGGCAAGGTCTTCGAGACTCCTCAATCTGAGGAG 1423700 Query 11862 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 11921 ||||||||| | || || || || || ||| | ||| | || ||| |||| Sbjct 1423699 ACGCCCTTCCACCCTCGTTCGCCTTACGGTGTCGCCAAGTTGTACGCGTTCTGGATCGTC 1423640 Query 11922 AAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAG 11981 ||||| ||||| || || || | | | |||||| ||||| ||||||||||||||| Sbjct 1423639 AAGAACTACCGCGAGTCTTACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACGAG 1423580 Query 11982 TCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATC 12020 || ||||||||||||| |||||| || | ||||||| Sbjct 1423579 TCCCCCCGTCGTGGCCGCACTTTCGTCACGAGGAAGATC 1423541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435014469440