Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 154 2e-32 seq6 136 5e-27 seq8 122 1e-22 >seq2 Length=936589 Score = 154 bits (170), Expect = 2e-32 Identities = 523/805 (65%), Gaps = 15/805 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| || ||||| ||||||| || ||| |||| || || | | ||||| || || Sbjct 3401 CCCGCAACACATGCTCATGCGTGTCGCCGTCGGCATCCACAGTCATGACATCGAGCGCGT 3460 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | || || | ||| || |||||| | | |||| ||||| | || || ||||| Sbjct 3461 CCTGCAGTCGTACAACCTCATGTCCGAGCGCTACTTCACCCACGCCTCGCCGACGCTCTT 3520 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || ||||| || || || | || |||||| | || | | ||||| || Sbjct 3521 CAACGCCGGTACGCCCCACCCGCAGCTCTCGTCGTGCTTCTTGGTCACGATGAAGGACGA 3580 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | || ||||| | || || | | ||| |||| ||||| ||| || || Sbjct 3581 CTCGATCGAAGGCATCTACGATACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGG 3640 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGG-GGGACA 104518 || || || || |||||| | | | || | |||||| ||| ||||| Sbjct 3641 TGGCATCGGCTTGAGCATCCACAACATCCGCGCGACCGG--CTCGTACATCGCCGGGACG 3698 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || | || | || || | || ||||| ||||| | ||| ||| || ||||| Sbjct 3699 AACGGCTACTCGAACGGCATCGTCCCCATGCTCCGCGTCTACAACAACACCGCACGCTAC 3758 Query 104579 GTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 || | |||| ||| | | | | || || | || |||| || ||||| ||||| Sbjct 3759 GTCGACCAAGGTGG-CAACAAGCGCCCCGGGGCTTTTGCCATCTACCTCGAGCCGTGGCA 3817 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCGG 104692 ||| || || | |||||||| || | || ||||| || | ||||| | |||| Sbjct 3818 CGCCGACGTCTTTGAGTTCCTCGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGCGC 3877 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 | ||||||||||||| ||| |||||||| || |||||||||||| || | || |||| Sbjct 3878 T--CGCGATCTCTTCTTCGCGCTCTGGATCCCCGATCTCTTCATGGAGCGTGTCGAGGCC 3935 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 || | ||| | || || || || | | ||||||| |||||| ||| | | || Sbjct 3936 GCCGGTGACTGGCCCCTGTTCTGCCCCGCCGAGGCACCGGGTCTCCACGAGGTCTATGGC 3995 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTG 104872 |||||||| | | | | |||||||||| | || || || || | |||| | Sbjct 3996 GAGGAGTTCCGCGTCTTGTTTGAAAAGTACGAGAAGGAGGGCCGAGCCAAGAAGACGATC 4055 Query 104873 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 || || || | | | ||| | || || ||| || | || |||||| |||| || | Sbjct 4056 CCCGC-GCAAAAGCTTTGGTACGCGATCCTCGAGGCCCAGGTCGAGACCGGTAACCCCTT 4114 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||||| ||||| |||||| ||| | ||| || || |||||| | || ||||| Sbjct 4115 CATGCTCTACAAGGACGCCGCGAACAAGAAGTCGAACCAGAAGAATCTCGGCACCATCAA 4174 Query 104992 GAGTTCCAATCTCTGTACAGAAATC 105016 | ||||| | || || || ||| Sbjct 4175 GTCGTCCAACTTGTGCACCGAGATC 4199 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||||||||| || || ||| ||| || || ||| || || || || | Sbjct 330146 CGCTTCTACCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 330087 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| |||||| ||||| || | ||| | || ||| Sbjct 330086 GAGACGACCCCCTTCTACCCTCGCTCGCCTTACGGTGTTGCCAAGTTGTACGCCTTCTGG 330027 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 | ||||| || ||||||||||| |||| ||| |||||| ||| |||||||||||| Sbjct 330026 ATTGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAAC 329967 Query 7412 CATGAATCACCGAGACGAGG-TGCAGACTTTGTCACAAAGAAGAT 7455 || || || || | || || ||| ||| ||||| | |||||| Sbjct 329966 CACGAGTCCCCCCGTCGTGGCCGCA-CCTTCGTCACGAGGAAGAT 329923 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||||||||||||||||| | ||||| || | ||||||||||||||| ||||| ||| Sbjct 55379 TGGCTCAAGAAGCGAGGCTTGATGCCCGGATTGACCTTCTCCAACGAGCTCATCTCGCGT 55320 Query 94930 GACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| |||||| || ||||| Sbjct 55319 GACGAGGGTCTCCACACCGACTTTGC 55294 >seq6 Length=2534666 Score = 136 bits (150), Expect = 5e-27 Identities = 240/341 (70%), Gaps = 14/341 (4%) Strand=Plus/Minus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| || |||||||||||||| || || |||| ||| ||| | |||||||||||| Sbjct 1950989 TTGATGATTAGACCCTTGATGTGAGATCCATCGTGATCCTGATCGGCCATGATCATGAGC 1950930 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 ||||| || ||| | || || || |||| ||||| || |||||||| || Sbjct 1950929 TTGCCATAACGGAGCGAGTCGACGTCGGTGTACACCTTGCCCTGCTGCAGACCCAAAATT 1950870 Query 169280 TTCTTGAGATCG-TTGAACTCTTGGTTTGATGT-GAGCTGTG---TGACAGAGGCATCGC 169334 | ||||| ||| ||| | ||| | | ||| |||| | || | | ||| |||| Sbjct 1950869 TGCTTGA--TCGCTTGGA-TCTCAGCAT--TGTCGAGCAACGCCTTGCCCGCGGCTTCGC 1950815 Query 169335 GAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGG 169394 | || || ||||||| || |||||||| ||||| |||| || ||||| ||||||| Sbjct 1950814 GCACGTTGAGCAACTTCCCTCGCAGAGGGAAAACACCATAGTTGTCTCGACCGACGACGG 1950755 Query 169395 AGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATT 169454 | ||||||| ||| ||||| | ||| || || || || || || | ||||||||| || | Sbjct 1950754 ACAGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCAGTCAAGATGAGCGTGCAAT 1950695 Query 169455 TT--CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCA 169493 | || | | | ||| || || ||||||||||| |||| Sbjct 1950694 TCGACCCGTTCCT--CGTTCCAGCGTTGTTCGCATCTTCCA 1950656 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 94842 CTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 94901 || ||| ||||||||| | | || | |||||||| || |||||||||||||| || || Sbjct 1721696 CTCCTCAGGTTCCTTCGCCTCCATCTTCTGGCTCAAAAAACGAGGTCTCATGCCCGGACT 1721637 Query 94902 CTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943 |||||||||||||| || || || || ||||| || || || Sbjct 1721636 GTGCTTCTCCAACGAACTCATATCCCGCGACGAAGGCCTTCA 1721595 >seq8 Length=1461820 Score = 122 bits (134), Expect = 1e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 7238 TACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAACGAGGAG 7297 || |||||||| || || ||| ||||||| || ||| || ||||| ||| |||||| Sbjct 1423759 TATCAAGCCTCGACCTCCGAGTTGTTTGGCAAGGTCTTCGAGACTCCTCAATCTGAGGAG 1423700 Query 7298 ACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTC 7357 || |||||| |||| || ||| ||||| ||| | ||| | || ||| ||||| Sbjct 1423699 ACGCCCTTCCACCCTCGTTCGCCTTACGGTGTCGCCAAGTTGTACGCGTTCTGGATCGTC 1423640 Query 7358 AAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAA 7417 || || |||||||||||||||| ||| |||||| ||| |||||||||||||| || Sbjct 1423639 AAGAACTACCGCGAGTCTTACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACGAG 1423580 Query 7418 TCACCGAGACGAGGTGCAGACTTT-GTCACAAAGAAGAT 7455 || || | || || | ||||| ||||| | |||||| Sbjct 1423579 TCCCCCCGTCGTGG-CCGCACTTTCGTCACGAGGAAGAT 1423542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260625021760