Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 356 3e-93 seq6 127 2e-24 >seq2 Length=936589 Score = 356 bits (394), Expect = 3e-93 Identities = 544/775 (70%), Gaps = 0/775 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || |||||| || | ||| | ||| |||| || ||||| Sbjct 3415 TCATGCGTGTCGCCGTCGGCATCCACAGTCATGACATCGAGCGCGTCCTGCAGTCGTACA 3474 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | ||||| || |||||| |||| || || |||||||| |||||| Sbjct 3475 ACCTCATGTCCGAGCGCTACTTCACCCACGCCTCGCCGACGCTCTTCAACGCCGGTACGC 3534 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||| ||| | ||| |||||| |||| |||||||||| ||||||||||| |||| Sbjct 3535 CCCACCCGCAGCTCTCGTCGTGCTTCTTGGTCACGATGAAGGACGACTCGATCGAAGGCA 3594 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||||||| ||| || | |||||||||| | ||||| ||||| | Sbjct 3595 TCTACGATACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGCATCGGCTTGA 3654 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| |||| |||| | ||| |||||||||||| | | | | Sbjct 3655 GCATCCACAACATCCGCGCGACCGGCTCGTACATCGCCGGGACGAACGGCTACTCGAACG 3714 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || ||||||||||||| ||||||||| || || |||||| |||| ||||| Sbjct 3715 GCATCGTCCCCATGCTCCGCGTCTACAACAACACCGCACGCTACGTCGACCAAGGTGGCA 3774 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 |||||| ||| | || |||||||||||||||||||||||||||||| | | |||| Sbjct 3775 ACAAGCGCCCCGGGGCTTTTGCCATCTACCTCGAGCCGTGGCACGCCGACGTCTTTGAGT 3834 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | ||||| || || ||| || || | || || | ||| || || || || | Sbjct 3835 TCCTCGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGCGCTCGCGATCTCTTCTTCG 3894 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || ||||| || || ||||||||| | || ||| | || || ||| |||| Sbjct 3895 CGCTCTGGATCCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGTGACTGGCCCCTGT 3954 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| |||| || || ||||| | ||||| || |||||||| || ||| Sbjct 3955 TCTGCCCCGCCGAGGCACCGGGTCTCCACGAGGTCTATGGCGAGGAGTTCCGCGTCTTGT 4014 Query 53793 ATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGG 53852 | | ||||| ||||||| |||||||| | || |||| || | ||| Sbjct 4015 TTGAAAAGTACGAGAAGGAGGGCCGAGCCAAGAAGACGATCCCCGCGCAAAAGCTTTGGT 4074 Query 53853 ATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGG 53912 | || |||||| || |||||| ||||| || | || | |||| ||||||||| | | Sbjct 4075 ACGCGATCCTCGAGGCCCAGGTCGAGACCGGTAACCCCTTCATGCTCTACAAGGACGCCG 4134 Query 53913 TCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 ||| ||||| ||||||||||| ||||| |||||| ||| |||||| || Sbjct 4135 CGAACAAGAAGTCGAACCAGAAGAATCTCGGCACCATCAAGTCGTCCAACTTGTG 4189 Score = 102 bits (112), Expect = 9e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||||| || ||| ||| || |||||| | | || |||| | |||||| || Sbjct 5128 TCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACGATCATTGACTTGTC 5187 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || || || ||||| | ||||||||| || || || || |||||| | || || ||| Sbjct 5188 CGCCGACCGAGGTGCCTTCATCGACCAATCGCAATCGCTCAACATCCACTTGTCGAGTCC 5247 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||| | | | ||||||||||| ||||| |||||| ||| | |||||||| Sbjct 5248 GACGATGGCGCAACTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGATTGAAGACGGG 5307 Query 55906 TATGTACTATCTGCGGACCCGCGC 55929 |||||||| |||| || ||||| Sbjct 5308 CATGTACTACTTGCGCACGCGCGC 5331 >seq6 Length=2534666 Score = 127 bits (140), Expect = 2e-24 Identities = 208/297 (70%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363 ||||| |||||||||| ||||| ||||| ||||| |||| ||||||||||||||| Sbjct 1951715 GTGAAGATGTAACGAGCCGAGGCAGCGTCCTTACCACCTTGCAA-ACGCGTACCGAATTG 1951657 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || | || || | || || |||||||||| || || || | ||| |||||| | Sbjct 1951656 ACCGTTGGGGTCAAGGATATTGAGGTTGTTGGATCCAACGAACTGTTGCGCCAAGCCAAT 1951597 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 ||| || ||||| | ||| ||||| || || ||||||| ||||| || |||||||| Sbjct 1951596 AATGGTGCCTTGCAAACTCAAGTCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAGCC 1951537 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 || || || | ||||| || || ||| || || ||||| ||| | | | || Sbjct 1951536 GGCAAGTTGTCCGACCTTGATTTCCTGCGTAAGCTTACGCTTGAAGCAACCGAACAAGAC 1951477 Query 117544 CTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 |||||| |||| || || | ||||| || ||||||||| ||| | |||| Sbjct 1951476 CTTGCGTTGACCCGGTTTGAACCCATCAATGACCGAAGGGATCGAGCGCACGTTGTC 1951420 Score = 122 bits (134), Expect = 1e-22 Identities = 205/297 (69%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||||||||| || | ||| || ||||| |||||| || ||||| || || || Sbjct 1951716 CGTGAAGATGTAACGAGCCGAGGCAGCGTCCTTACCACCTTGCAAACGCGTACCGAATTG 1951657 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || ||| || |||| ||||||||||||| || ||||| | || ||||| | Sbjct 1951656 ACCGTTGGGGTCAAGGATATTGAGGTTGTTGGATCCAACGAACTGTTGCGCCAAGCCAAT 1951597 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 ||| ||||| |||| |||| |||||||| || ||||||| ||||| |||| ||| || Sbjct 1951596 AATGGTGCCTTGCAAACTCAAGTCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAGCC 1951537 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 || | || | ||||| || ||| ||| || || ||||| || || | | || Sbjct 1951536 GGCAAGTTGTCCGACCTTGATTTCCTGCGTAAGCTTACGCTTGAAGCAACCGAACAAGAC 1951477 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 |||||| || ||||| || || || | || ||| ||||| ||| | |||| Sbjct 1951476 CTTGCGTTGACCCGGTTTGAACCCATCAATGACCGAAGGGATCGAGCGCACGTTGTC 1951420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215835835200