Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07-
16] 24 sequences; 23,461,035 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2 356 3e-93
seq6 127 2e-24
>seq2
Length=936589
Score = 356 bits (394), Expect = 3e-93
Identities = 544/775 (70%), Gaps = 0/775 (0%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| |||||| | || |||||| || | ||| | ||| |||| || |||||
Sbjct 3415 TCATGCGTGTCGCCGTCGGCATCCACAGTCATGACATCGAGCGCGTCCTGCAGTCGTACA 3474
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | | ||||| || |||||| |||| || || |||||||| ||||||
Sbjct 3475 ACCTCATGTCCGAGCGCTACTTCACCCACGCCTCGCCGACGCTCTTCAACGCCGGTACGC 3534
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
||||| ||| | ||| |||||| |||| |||||||||| ||||||||||| ||||
Sbjct 3535 CCCACCCGCAGCTCTCGTCGTGCTTCTTGGTCACGATGAAGGACGACTCGATCGAAGGCA 3594
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| ||||||||| ||| || | |||||||||| | ||||| ||||| |
Sbjct 3595 TCTACGATACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGCATCGGCTTGA 3654
Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492
| | ||| |||| |||| |||| | ||| |||||||||||| | | | |
Sbjct 3655 GCATCCACAACATCCGCGCGACCGGCTCGTACATCGCCGGGACGAACGGCTACTCGAACG 3714
Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552
| ||||| || ||||||||||||| ||||||||| || || |||||| |||| |||||
Sbjct 3715 GCATCGTCCCCATGCTCCGCGTCTACAACAACACCGCACGCTACGTCGACCAAGGTGGCA 3774
Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612
|||||| ||| | || |||||||||||||||||||||||||||||| | | ||||
Sbjct 3775 ACAAGCGCCCCGGGGCTTTTGCCATCTACCTCGAGCCGTGGCACGCCGACGTCTTTGAGT 3834
Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672
| ||||| || || ||| || || | || || | ||| || || || || |
Sbjct 3835 TCCTCGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGCGCTCGCGATCTCTTCTTCG 3894
Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732
| || ||||| || || ||||||||| | || ||| | || || ||| ||||
Sbjct 3895 CGCTCTGGATCCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGTGACTGGCCCCTGT 3954
Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792
| ||||| |||| || || ||||| | ||||| || |||||||| || |||
Sbjct 3955 TCTGCCCCGCCGAGGCACCGGGTCTCCACGAGGTCTATGGCGAGGAGTTCCGCGTCTTGT 4014
Query 53793 ATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGG 53852
| | ||||| ||||||| |||||||| | || |||| || | |||
Sbjct 4015 TTGAAAAGTACGAGAAGGAGGGCCGAGCCAAGAAGACGATCCCCGCGCAAAAGCTTTGGT 4074
Query 53853 ATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGG 53912
| || |||||| || |||||| ||||| || | || | |||| ||||||||| | |
Sbjct 4075 ACGCGATCCTCGAGGCCCAGGTCGAGACCGGTAACCCCTTCATGCTCTACAAGGACGCCG 4134
Query 53913 TCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967
||| ||||| ||||||||||| ||||| |||||| ||| |||||| ||
Sbjct 4135 CGAACAAGAAGTCGAACCAGAAGAATCTCGGCACCATCAAGTCGTCCAACTTGTG 4189
Score = 102 bits (112), Expect = 9e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785
|||||||| || ||| ||| || |||||| | | || |||| | |||||| ||
Sbjct 5128 TCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACGATCATTGACTTGTC 5187
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
|| || || ||||| | ||||||||| || || || || |||||| | || || |||
Sbjct 5188 CGCCGACCGAGGTGCCTTCATCGACCAATCGCAATCGCTCAACATCCACTTGTCGAGTCC 5247
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
| |||| | | | ||||||||||| ||||| |||||| ||| | ||||||||
Sbjct 5248 GACGATGGCGCAACTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGATTGAAGACGGG 5307
Query 55906 TATGTACTATCTGCGGACCCGCGC 55929
|||||||| |||| || |||||
Sbjct 5308 CATGTACTACTTGCGCACGCGCGC 5331
>seq6
Length=2534666
Score = 127 bits (140), Expect = 2e-24
Identities = 208/297 (70%), Gaps = 2/297 (1%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363
||||| |||||||||| ||||| ||||| ||||| |||| |||||||||||||||
Sbjct 1951715 GTGAAGATGTAACGAGCCGAGGCAGCGTCCTTACCACCTTGCAA-ACGCGTACCGAATTG 1951657
Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423
|| | || || | || || |||||||||| || || || | ||| |||||| |
Sbjct 1951656 ACCGTTGGGGTCAAGGATATTGAGGTTGTTGGATCCAACGAACTGTTGCGCCAAGCCAAT 1951597
Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483
||| || ||||| | ||| ||||| || || ||||||| ||||| || ||||||||
Sbjct 1951596 AATGGTGCCTTGCAAACTCAAGTCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAGCC 1951537
Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543
|| || || | ||||| || || ||| || || ||||| ||| | | | ||
Sbjct 1951536 GGCAAGTTGTCCGACCTTGATTTCCTGCGTAAGCTTACGCTTGAAGCAACCGAACAAGAC 1951477
Query 117544 CTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600
|||||| |||| || || | ||||| || ||||||||| ||| | ||||
Sbjct 1951476 CTTGCGTTGACCCGGTTTGAACCCATCAATGACCGAAGGGATCGAGCGCACGTTGTC 1951420
Score = 122 bits (134), Expect = 1e-22
Identities = 205/297 (69%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087
|||||||||||| || | ||| || ||||| |||||| || ||||| || || ||
Sbjct 1951716 CGTGAAGATGTAACGAGCCGAGGCAGCGTCCTTACCACCTTGCAAACGCGTACCGAATTG 1951657
Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147
|| ||| || |||| ||||||||||||| || ||||| | || ||||| |
Sbjct 1951656 ACCGTTGGGGTCAAGGATATTGAGGTTGTTGGATCCAACGAACTGTTGCGCCAAGCCAAT 1951597
Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207
||| ||||| |||| |||| |||||||| || ||||||| ||||| |||| ||| ||
Sbjct 1951596 AATGGTGCCTTGCAAACTCAAGTCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAGCC 1951537
Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267
|| | || | ||||| || ||| ||| || || ||||| || || | | ||
Sbjct 1951536 GGCAAGTTGTCCGACCTTGATTTCCTGCGTAAGCTTACGCTTGAAGCAACCGAACAAGAC 1951477
Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
|||||| || ||||| || || || | || ||| ||||| ||| | ||||
Sbjct 1951476 CTTGCGTTGACCCGGTTTGAACCCATCAATGACCGAAGGGATCGAGCGCACGTTGTC 1951420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215835835200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |