Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq10 107 1e-18 seq1 105 5e-18 seq23 104 2e-17 >seq10 Length=1653987 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || ||||| || || ||||| ||||| || || || || Sbjct 915518 ATGCAAATCTTTGTCAAGACTCTTACGGGCAAGACCATCACCCTCGAGGTCGAGTCATCG 915459 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | || ||||| || ||| | || || || || Sbjct 915458 GACACGATTGACAATGTCAAAGCCAAGA-TTCAGGACAAGGAGGGTATTCCCCCCGACCA 915400 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| |||||||| || || || | || || | | |||||||| Sbjct 915399 ACAGCGTCTCATCTTTGCGGGCAAACAGCTCGAGGATGGCCGTACGCTTGCGGATTACAA 915340 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 915339 CATCCAAAAGGAGTCGAC 915322 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || |||||||| ||||| || || ||| || Sbjct 915290 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAGACGATCACGCTCGAGGTCGAATCCTCG 915231 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| ||||| | || || ||||| Sbjct 915230 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAG 915171 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || || || || || || || || | || || | | ||||||||| Sbjct 915170 CAGCGATTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACGCTTGCGGATTACAAC 915111 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 915110 ATCCAAAAGGAGTCGAC 915094 >seq1 Length=554179 Score = 105 bits (116), Expect = 5e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 |||| || ||||| || ||||||||||| || || ||||| ||||| || || || | | Sbjct 255492 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCCG 255551 Query 23672 ACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 |||| | || | | ||| || || ||||| ||||| | ||||| || |||| Sbjct 255552 ACACGATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCGCCCGACCAAC 255611 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | ||| | || || |||||||| || || || || | ||||| || | ||| ||||||| Sbjct 255612 AACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACCTTGGCCGACTACAACA 255671 Query 23792 TACAAAAAGAGTCCAC 23807 | ||||| ||||| || Sbjct 255672 TCCAAAAGGAGTCGAC 255687 >seq23 Length=1006473 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 ||| || ||||| || || || ||||| || |||||||| ||||| || || || | || Sbjct 106405 GCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 106464 Query 23673 CACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACA 23732 ||| | || | | || || || ||||| ||||| | |||||||| || || Sbjct 106465 CACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 106524 Query 23733 GCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACAT 23792 || || || || |||||||| || || || || | |||||||| | |||||||||||| Sbjct 106525 ACGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTTTGGCCGATTACAACAT 106584 Query 23793 ACAAAAAGAGTCCAC 23807 ||||| ||||| || Sbjct 106585 CCAAAAGGAGTCGAC 106599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009501132192