Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900008665.1_202016-07-08] 5,182 sequences; 26,789,479 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 194 2e-44 seq158 134 1e-26 seq75 134 1e-26 seq428 127 2e-24 seq9 127 2e-24 seq42 123 3e-23 seq3 123 3e-23 >seq5 Length=201761 Score = 194 bits (214), Expect = 2e-44 Identities = 177/223 (79%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 116647 GTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACAC 116706 |||||| ||||| ||||| || || ||||||| ||| ||| |||||||||||||||||| Sbjct 140817 GTACAAGAAGGCTGAGGCATCTTTTTGGACCGCCGAAGAGATGGACCTGTCCAAGGACAT 140758 Query 116707 GAGCGACTGGGAGCGCTTGAACGA---CAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | ||||||||| | | | | | |||||||| | |||||| |||||| || || Sbjct 140757 GCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCTCGCACGTCCTCGC 140698 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 ||||||||||||| ||||||||||||||||||||| |||||||||| ||| || || Sbjct 140697 CTTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCGATTCTCTGGTGA 140638 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| ||| |||||||| || ||||||||||| ||||| ||| Sbjct 140637 GGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 140595 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 ||||| |||| || ||||||||||| || ||| | |||||||| |||| ||| |||| Sbjct 140098 TTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTCTCCAAC 140039 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 ||||||||||| | |||||||| || || ||||||||| || Sbjct 140038 GAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTG 139995 >seq158 Length=48607 Score = 134 bits (148), Expect = 1e-26 Identities = 153/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| || || || || ||||||||||| ||||||||| |||| ||||| | ||| Sbjct 44540 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 44599 Query 40751 ACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | |||| ||||| || || | ||||| || |||||||| | |||||| Sbjct 44600 ACACGATCGACAACG-TCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAG 44658 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || ||||| ||||| || || | |||||| | |||||||||| Sbjct 44659 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAC 44718 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| |||||| | || || || Sbjct 44719 ATCCAAAAGGAGTCGACCCTCCA 44741 >seq75 Length=81244 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| || ||||| |||| ||||| || | Sbjct 7283 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 7342 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | || || |||||||| ||| | ||||| Sbjct 7343 GACACGATCGACAACG-TCAAGACCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCA 7401 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| ||| ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 7402 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 7461 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | ||||| || | ||| |||| Sbjct 7462 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCG 7497 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| || ||||| |||| ||||| | | Sbjct 7511 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 7570 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||| || ||||| ||| | ||||| Sbjct 7571 GACACGATCGACAACG-TCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCA 7629 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| ||||||||| ||||| || || | || || ||| || ||||| Sbjct 7630 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAA 7689 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | ||||| || | ||| |||| Sbjct 7690 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCG 7725 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| || ||||| |||| ||||| | | Sbjct 7055 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 7114 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| || ||||| ||| | ||||| Sbjct 7115 GACACGATCGACAACG-TCAAGACCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 7173 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| ||| ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 7174 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 7233 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | ||||| || | ||| |||| Sbjct 7234 TATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCG 7269 >seq428 Length=13982 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| || | Sbjct 13728 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 13669 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| |||||||| || | ||||| Sbjct 13668 GACACGATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCA 13610 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| || ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 13609 GCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 13550 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | |||||||| Sbjct 13549 TATCCAGAAGGAGTCGACGCTGCA 13526 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| | | Sbjct 13956 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 13897 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||||| || |||| ||||| |||||||| || | |||||| Sbjct 13896 GATACGATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 13837 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 13836 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 13777 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | |||||||| Sbjct 13776 ATCCAGAAGGAGTCGACGCTGCA 13754 >seq9 Length=159304 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| || | Sbjct 349 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 290 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| |||||||| || | ||||| Sbjct 289 GACACGATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCA 231 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| || ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 230 GCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 171 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | |||||||| Sbjct 170 TATCCAGAAGGAGTCGACGCTGCA 147 >seq42 Length=107705 Score = 123 bits (136), Expect = 3e-23 Identities = 150/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 40692 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 |||||| || || || || || |||||||| || |||||| |||| ||||| | |||| Sbjct 55166 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 55225 Query 40752 CAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 || | | |||| ||||| || || | ||||| || |||||||| | ||||||| Sbjct 55226 CACGATCGACAACG-TCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 55284 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 |||| ||||||| || ||||| ||||| || || | |||||| | ||||||||||| Sbjct 55285 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 55344 Query 40871 TCCAGAAGGAGGCCACGCTGCA 40892 |||| |||||| | || || || Sbjct 55345 TCCAAAAGGAGTCGACCCTCCA 55366 >seq3 Length=215525 Score = 123 bits (136), Expect = 3e-23 Identities = 168/234 (72%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| |||||||||| | ||| | ||||| || ||| ||| ||| ||| | ||||| Sbjct 29025 ATTTGGGCCATGTACAAACAAGCCCAAGCGTCCTTTTGGTCCGCCGAAGAGATCGACCTC 28966 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 || ||| | ||||||| | | | | ||| || |||| ||| | || ||| Sbjct 28965 GGCAGCGACCTCAACGACTGGCACCACAAGCTCAACAACGACGAACGCTACTTTATCGCC 28906 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||| ||||| |||||||| || || |||| || ||||| |||| ||| | Sbjct 28905 CACGTGCTCGCCTTCTTCGCCGCTTCGGATGGGGTCGTGAATGAGAACTTGGTTGAGAGG 28846 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| | ||||||||| | ||||||||| ||||||| || |||||||||||| Sbjct 28845 TTCTCAAGTGAGGTGCAGTTCGCCGAGGCGAGGTGCTTTTATGGCTTTCAGATC 28792 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 |||||| |||| ||||||||||| ||||| ||||||||||| ||||| ||||| |||| Sbjct 28331 TTCGCCTCCATCTTTTGGCTCAAAAAACGAGGCCTCATGCCTGGCCTCTCTTTCTCCAAC 28272 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 |||||||| ||| | ||||| ||||| ||| ||| || ||| | |||||| ||| Sbjct 28271 GAGCTCATATCCCGCGACGAAGGTCTTCATACCGAATTCGCCGTCCTCTTGTTCAGTCAT 28212 Query 117206 TTGGTGCAGCGACC-GAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCAT 117264 ||| || |||| | | || | || | |||||| | || ||||||| || Sbjct 28211 TTGAACAAGAGACCAGGTCAAGGATTGGTGCATCG-GATCGTGAAGGAGGCGGTCGATAT 28153 Query 117265 CGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTG 117298 |||| || ||| | ||||| || ||||| ||| Sbjct 28152 CGAGAAGGAGTTCTTGACCGAGGCTCTGCCTGTG 28119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515185826676320