Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900008665.1_202016-07-08] 5,182 sequences; 26,789,479 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq463 275 6e-69 seq42 114 1e-20 seq158 107 2e-18 seq428 95.1 1e-14 seq75 95.1 1e-14 seq9 86.0 6e-12 >seq463 Length=11792 Score = 275 bits (304), Expect = 6e-69 Identities = 963/1493 (65%), Gaps = 50/1493 (3%) Strand=Plus/Minus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || ||||| | || ||| || || |||||| |||||| ||||||||| Sbjct 4461 GAAGTGTATGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGACTGGTCGACGCGGTCGGC 4402 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || ||||| ||| |||||||| | || |||||||||| ||| || ||||||| Sbjct 4401 ATTGGCGCGCACACGAGCGAGTTACGCAGACCGTGCTTTGCAATCTTCTCCTTGAGCTCG 4342 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 |||||||||||||||| | ||| |||||| |||||| ||||| |||| | |||| Sbjct 4341 GACCAGTCCCACAGATTGCTCGGGGTCACAC---CCCACAAGTCGTACTGCAGCTCGCCC 4285 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTA---------------CGGA----CCAT- 22721 || ||||| || ||| || ||| ||| | || Sbjct 4284 TGAGAAGCCGGAGATCCAGGGTAAGTCGAGTAGTAGCCTGGGTCGCCCGGGTTAGCGATG 4225 Query 22722 ---ATATCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAG 22777 | ||||| || | ||||| || ||| | |||| ||| || || ||||||||| Sbjct 4224 GCAAAGTCGCGCGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAAG 4165 Query 22778 ATTTTCTTGTTCAA-TTCGGCGGC---GGCGACGCTTTCGTACGGCATACGCATCATCAC 22833 |||| |||||| | || ||| | ||||| ||| ||||||| || || Sbjct 4164 ATTTGCTTGTTGAGCTTACGCGCCTCGGGCGAA----TCGAACGGCATCGCCAAGGCCAT 4109 Query 22834 GAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACAC 22893 ||||||||| || | ||| || || || || ||||| || |||| | || || Sbjct 4108 GAACGCGTCGGCGAGACCTTGCACTCCGATGCCGATGGGGCGGTGGCGGAAGTTGGAGTT 4049 Query 22894 TTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 || |||||| | ||||| | || ||||| | | ||||||||| | || Sbjct 4048 TTGCGCCTCGATGACGGGATAGTAGTTGACGTCGATGATGCGGTTCAAGTTGAAAGCGAC 3989 Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTT 23013 | || | | ||||||||| ||||| | | | || || Sbjct 3988 GACCTTGACGACCTCGTGCAACTTCTTAAAGTCGTACACGCCG--TCCTTGATGAAGCTC 3931 Query 23014 GTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTAC 23073 | ||| |||||||||| | ||||| ||||| |||||| | || |||||| | Sbjct 3930 GGCAACG-CGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGAT 3872 Query 23074 AATTTCGGTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTT 23131 || ||||| || || || | || |||| |||||||| | ||| | ||||| | ||| | Sbjct 3871 GATCTCGGTGCACAGGTT-CGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCT 3813 Query 23132 CGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATG 23191 | | || | || ||||||||||| | || |||| || |||||||| | || | Sbjct 3812 TGTTCGCG-GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGA 3754 Query 23192 ATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTAC 23251 ||||| ||| | | || ||| | | | | | | ||| || | ||||| Sbjct 3753 ATCGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTAT 3694 Query 23252 TTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC 23311 || | | |||| ||| || || | || || ||| |||||||| | || Sbjct 3693 TTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGTAGGCCGGGGGCTTCGGCG 3634 Query 23312 GGACACATGAGACTCCACATTGA-GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTAT 23370 || || | |||| ||| || | | | || || || ||| |||||||| || || Sbjct 3633 GGGCAGAAGAGAGGCCA-ATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAAT 3575 Query 23371 CCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAA 23430 ||| || || |||| || || || ||||| || ||||| |||||| |||||| | Sbjct 3574 CCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAG 3515 Query 23431 ATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGG 23490 |||| || || || ||||| || ||||||||||||||||| | || || || || || Sbjct 3514 GTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGG 3455 Query 23491 TCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGG 23550 | ||| ||||| || || |||||||| || || ||||||||||| || | ||||| || Sbjct 3454 ACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGG 3395 Query 23551 CACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTT 23610 || | ||||| || |||| ||| || | || || | || || | ||| Sbjct 3394 GACAATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTT 3335 Query 23611 GTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGT 23670 ||| | | ||||| || || ||| | | || || || | |||||| || || || Sbjct 3334 GTGGATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGT 3275 Query 23671 GTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG 23730 |||||| ||||| || || || || || ||| ||||| |||||| || || | || Sbjct 3274 GTCGTAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTG 3215 Query 23731 CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGA 23790 || | ||||| |||| ||| || ||||| |||||| |||||||| | | || Sbjct 3214 CGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGA 3155 Query 23791 CATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGAC 23850 ||| || ||||||| | | | || |||||||| | ||||| || |||| |||||| Sbjct 3154 CATAAGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGAC 3095 Query 23851 GCGCATCATCATGTATTGAGGTC--TC-TCGACCGTGACGCCGTTAATTTTGAACAGATA 23907 ||||| | ||||| ||| || | || ||||| | ||||| || | || || Sbjct 3094 ACGCATGAGCATGTGTTGCGGGCGTTCGGCGACCTT---GCCGTCGATGCGAAGCAAGTA 3038 Query 23908 TGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 || |||| | |||||| || ||||| |||| ||| || || || |||| Sbjct 3037 GGAGCGTTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 2985 >seq42 Length=107705 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || || |||||| || || |||||||| || ||||| ||||||||| |||| || || | Sbjct 55160 AATCAGGCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTC 55219 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||||||| |||| | ||||| || ||| | |||||||||||| | ||||| | Sbjct 55220 GTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAG 55278 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || || || ||||| ||| | || || || || ||| | Sbjct 55279 ACCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACT 55338 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| ||||| || ||||| || || |||| || Sbjct 55339 ACAACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 55375 >seq158 Length=48607 Score = 107 bits (118), Expect = 2e-18 Identities = 169/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| || || ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 44540 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 44599 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | |||||||||||| | ||||| |||||| Sbjct 44600 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAG 44658 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || ||||| ||| | || || || || ||| || ||| Sbjct 44659 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAC 44718 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 || ||||| || ||||| || || |||| || | ||| | || ||| ||||||| Sbjct 44719 ATCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTGCGTGGTGGTGCCAAGAAGCG 44777 >seq428 Length=13982 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || |||| Sbjct 13956 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 13897 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 13896 GATACGATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 13837 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||| ||| | || || Sbjct 13836 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 13802 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 13728 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 13669 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||| ||| | || || |||||| Sbjct 13668 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 13609 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || || |||||||| ||| | || || Sbjct 13608 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGA 13574 >seq75 Length=81244 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| |||||||| |||| || || |||| Sbjct 7055 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 7114 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 7115 GACACGATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 7173 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || ||||||||||| ||| | || || Sbjct 7174 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 7209 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| |||||||| |||| || || |||| Sbjct 7511 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 7570 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 7571 GACACGATCGACAACGTCAAGACCAAGATTCA-GGACAAGGAAGGCATTCCCCCAGACCA 7629 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTT---GGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || ||||| ||||| ||| | ||| | | || | || | | ||||| Sbjct 7630 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACG-CT-CGCG-GATTA 7686 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || |||| || Sbjct 7687 CAACATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 7722 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 7283 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 7342 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||| ||||| ||| | || || ||||| Sbjct 7343 GACACGATCGACAACGTCAAGACCAAGA-TCCAGGATAAGGAGGGCATTCCCCCAGACCA 7401 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || ||||||||||| ||| | || || || | |||||| || Sbjct 7402 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 7461 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || |||| || Sbjct 7462 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 7494 >seq9 Length=159304 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 349 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 290 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||| ||| | || || |||||| Sbjct 289 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 230 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || || |||||||| ||| | || || Sbjct 229 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGA 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445737525481440