Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900008665.1_202016-07-08] 5,182 sequences; 26,789,479 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq75 141 1e-28 seq428 131 2e-25 seq9 122 9e-23 seq158 118 1e-21 seq42 113 5e-20 >seq75 Length=81244 Score = 141 bits (156), Expect = 1e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| || | || |||||| || ||||||||||| || || || || | Sbjct 7270 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCC 7211 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| || | |||||||||||| | || | || ||||| Sbjct 7210 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTT 7151 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || |||| ||| | | | |||||| ||| || || |||| ||||| Sbjct 7150 GTCCTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGA 7092 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| |||||||| |||||||| ||||| Sbjct 7091 TCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 7055 Score = 141 bits (156), Expect = 1e-28 Identities = 176/236 (75%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034 |||| |||| || | | ||||| |||||| || | || |||||| || || ||||| Sbjct 7744 TTATTGACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTA 7685 Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| || || || || | || || |||||||| || ||||| || | |||||||||||| Sbjct 7684 ATCCGCGAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTC 7625 Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTC 42152 | || | || ||||||||| ||| | || || |||| ||| | | | |||||| | Sbjct 7624 TGGGGGAATGCCTTCCTTGTCC-TGAATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGAC 7567 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || |||| |||||| || |||||||| |||||||| |||||||| ||||| Sbjct 7566 GACTCGACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 7511 >seq428 Length=13982 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||| | |||||| |||| || |||||| || ||||||||||| || Sbjct 13729 ACCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGC 13788 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| |||||||| || | |||||||||||| | || Sbjct 13789 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGG 13848 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | || |||||||||| ||| | || | |||| | | | ||| || ||| || | Sbjct 13849 AATGCCCTCCTTGTCC-TGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGA 13907 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| |||||| || ||||| || || ||||| || ||||||||||| Sbjct 13908 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 13956 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||| | |||||| |||| || |||||| || ||||||||||| || Sbjct 13502 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 13561 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| ||||| || || | |||||||||||| | || Sbjct 13562 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 13621 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | || ||||||||| ||| || |||| ||| | | | |||||| || || || Sbjct 13622 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGAC 13680 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||| || ||||| || || ||||| || ||||||||||| Sbjct 13681 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 13728 >seq9 Length=159304 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||| | ||||| |||| || |||||| || ||||||||||| || Sbjct 122 ACCACCTCGGAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGC 181 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| ||||| || || | |||||||||||| | || Sbjct 182 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGG 241 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | || ||||||||| ||| || |||| ||| | | | |||||| || || | Sbjct 242 AATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGA 300 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| |||||| || ||||| || || ||||| || ||||||||||| Sbjct 301 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 349 >seq158 Length=48607 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| || |||| || || | || || |||||||| || || || Sbjct 44730 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 44671 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| || |||||||| | || | || |||||||| ||| || |||| ||| Sbjct 44670 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGT 44612 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||||| ||| || || |||| |||||||| |||||||| || ||||| | Sbjct 44611 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 44552 Query 42196 CAAAGATTTGCA 42207 |||||||||||| Sbjct 44551 CAAAGATTTGCA 44540 >seq42 Length=107705 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| || |||| || || | || || |||||||| || || || Sbjct 55355 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 55296 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| || |||||||| | || | || |||||||| ||| || |||| ||| Sbjct 55295 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGT 55237 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||||| ||| || || |||| ||||| || |||||||| || ||||| | Sbjct 55236 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGA 55177 Query 42196 CAAAGATTTGC 42206 ||||||||||| Sbjct 55176 CAAAGATTTGC 55166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543177613390880