Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900008665.1_202016-07-08] 5,182 sequences; 26,789,479 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq463 192 9e-43 seq5 116 6e-20 seq313 113 7e-19 seq3 111 2e-18 seq8 105 1e-16 seq186 87.8 3e-11 seq9 86.0 1e-10 >seq463 Length=11792 Score = 192 bits (212), Expect = 9e-43 Identities = 198/259 (76%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| ||| |||| ||||||||||| |||| |||||| || Sbjct 3438 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAG 3379 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||||| ||| | ||||| | ||||| | || ||| Sbjct 3378 TAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 3319 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || ||||| ||||| ||||| || Sbjct 3318 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAAATGCCTTCA 3259 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| || ||||||| | ||| || || ||||| |||||| | | ||| ||| Sbjct 3258 ATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 3199 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||||||||| |||| Sbjct 3198 GCGTTGAAGAGCGTCGGCG 3180 Score = 136 bits (150), Expect = 6e-26 Identities = 296/449 (66%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||| ||| ||| || || ||||||||||||||| | |||| | | ||||| || ||| Sbjct 3888 GGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGATTC 3829 Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683 | ||||| || ||| ||||||| |||| ||||| | || || || ||| Sbjct 3828 TTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCG 3769 Query 2071684 ATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGG 2071743 | ||| || | || || |||||| | ||||||| | || || | |||||| Sbjct 3768 ACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGG 3709 Query 2071744 CCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGG 2071803 |||| | | |||| || | |||| | | ||||| ||| Sbjct 3708 CCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGTAGG 3649 Query 2071804 CCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATA 2071863 ||||| || |||| ||||| ||||| | ||| |||||| | | | | || || ||| Sbjct 3648 CCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATG 3589 Query 2071864 AACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCG 2071923 || || ||| |||| || | | |||||||| || || || |||||||||||| Sbjct 3588 AAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCG 3529 Query 2071924 TGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAG 2071983 |||||||| ||||| || | |||| || |||||||||||||||||| |||||| Sbjct 3528 TGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATC 3469 Query 2071984 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| || |||||| ||| || Sbjct 3468 GCGAAGGCTCCGGGACGCTTGTTGCCACC 3440 Score = 102 bits (112), Expect = 1e-15 Identities = 171/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || |||| | ||| ||||||| ||||||||||| Sbjct 5038 TGGTCGACGGTGAACTTGATCGCACCAACGGCGGCCCGCGTGCGCAAGTAGTACATGCCC 4979 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGA--TGGACTCGGCATTCG 2069368 ||||| || || | ||| ||||| |||||||||||||| || | | | || | Sbjct 4978 GTCTTCAGTCCTCTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGC-CATCGTTGG 4920 Query 2069369 GGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCG 2069428 | || || ||| || ||| ||||| || |||||| | ||| | |||||||| | Sbjct 4919 GCTCGACA-AGTGGATGTTAAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGCGG 4861 Query 2069429 CCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAGA 2069487 || |||||| | | | ||| || | |||||| ||||||||| | | |||||||||| Sbjct 4860 ACAAGTCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGA 4802 Query 2069488 T 2069488 | Sbjct 4801 T 4801 Score = 93.3 bits (102), Expect = 7e-13 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCT 2070109 ||| || |||||||| ||||| ||||| ||| |||||| |||||| ||| | Sbjct 4189 CGCGGCGTGGTAGATGGTCTCGAAGATT-TGCTTGTTGAGCTTACGCGCCTCGGGCGAAT 4131 Query 2070110 CCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCAT 2070167 | |||||| ||| | | || ||||||||||| || || ||||| |||| ||| || Sbjct 4130 CGAACGGCATCGCCA--AGGCCATGAACGCGTCGGCGAGACCTTGCACTCCGATGCCGAT 4073 Query 2070168 CGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 || |||||||| | ||| |||| | |||||| || || |||| ||||| |||||| Sbjct 4072 GGGGCGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGATAGTAGTTGACGTCGAT 4013 Query 2070228 CACGCGGTTGAGGTTG 2070243 | |||||| | |||| Sbjct 4012 GATGCGGTTCAAGTTG 3997 >seq5 Length=201761 Score = 116 bits (128), Expect = 6e-20 Identities = 145/198 (73%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| ||| || || ||| |||||| ||||||||| Sbjct 140620 GCCTCGGCTGACTGGACCTCACCAGAGAATCGCTCGACCAAGTTCTCGTTGACGATGCCG 140679 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||||||||||||||||||| ||| |||| ||||||||| ||||| Sbjct 140680 TCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGC 140739 Query 796270 ---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | | |||| | ||||| | ||| |||||||||||||| || Sbjct 140740 TTGTTGTCCCAGTCGTGCATGTCCTTGGACAGGTCCATCTCTTCGGCGGTCCAAAAAGAT 140799 Query 796327 GCCTCGGCCTTTTTGTAC 796344 ||||| ||||| |||||| Sbjct 140800 GCCTCAGCCTTCTTGTAC 140817 >seq313 Length=21974 Score = 113 bits (124), Expect = 7e-19 Identities = 162/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 20986 CCTTCGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 21045 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGA---TCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | || ||| ||| | |||| || ||| || || Sbjct 21046 AGGTCTGGATCTCGCGCGACGAGATAGTCGCCTTGTGGTTGTAGGT---CGCGAGCTTGC 21102 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 || ||| || |||||| || | || |||||||| |||||||| | |||| ||||| Sbjct 21103 ACGCTTCGATGGTGATGCGCTCAAAGATATCGTTGACGAACGAGTTGAGGATCAGCATCG 21162 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| || ||||| | ||||||| Sbjct 21163 CCTTGTTCGAGATACCGGTGTCGGGGTGGACTTGCTTCAACACCTTG 21209 >seq3 Length=215525 Score = 111 bits (122), Expect = 2e-18 Identities = 159/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTC-CTTCATGAAGCGGCCGGCCAGGTTCTCAG 796198 ||| ||||| ||||||| | || ||||| ||| | ||| | | ||| ||||||| Sbjct 28807 AAAGCACCTCGCCTCGGCGAACTGCACCTCACTTGA-GAACCTCTCAACCAAGTTCTCAT 28865 Query 796199 CCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGT 796258 ||||| || || |||||||| |||||||| ||||| |||||||| || |||| Sbjct 28866 TCACGACCCCATCCGAAGCGGCGAAGAAGGCGAGCACGTGGGCGATAAAGTAGCGTTCGT 28925 Query 796259 CGTCGCTGAGCGAGAC---CCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGG 796315 ||| | ||||| | ||||| | |||| ||||||||||| ||| ||||||| Sbjct 28926 CGTTGTTGAGCTTGTGGTGCCAGTCGTTGAGGTCGCTGCCGAGGTCGATCTCTTCGGCGG 28985 Query 796316 TCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||||||| || | ||| | ||||||||| |||| ||| Sbjct 28986 ACCAAAAGGACGCTTGGGCTTGTTTGTACATGGCCCAAATC 29026 >seq8 Length=175494 Score = 105 bits (116), Expect = 1e-16 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 1485487 TTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCG 1485546 ||||| || || |||| ||||||| ||| || ||| || | | ||||| ||| || | Sbjct 37337 TTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCGAA 37396 Query 1485547 GTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGCCG 1485603 |||||||||||||| | |||||| ||| | |||| | |||||| || | Sbjct 37397 GTCTGGATCTCGCGCGACGTGATCGTCGCCTTGTGGTTGT-ATTGCGCG--AGCTTGGAC 37453 Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 |||||| | |||||| || | ||||||||||| |||||||| | ||| ||||| Sbjct 37454 GCCTCGAGGGTGATGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATTAGCATCGCC 37513 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| ||||||||| || || | | ||| ||| Sbjct 37514 TTGTTCGAGATACCCGTGTCGGGGTGAACTTGTCTCAACACTTTG 37558 >seq186 Length=41971 Score = 87.8 bits (96), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||||||||| || ||||||| ||||||| ||| || || ||| | | || Sbjct 41864 ACTTGGTGACGGCCTTGGTTCCTTCTGAGATGGCGTGCTTGGACAACTCTCCGGGGAGGA 41923 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | ||||| || | |||||||||||| || Sbjct 41924 TGAGGCGGACCGAGGTCTGGATCTCTCG 41951 >seq9 Length=159304 Score = 86.0 bits (94), Expect = 1e-10 Identities = 170/252 (67%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGC 2019206 |||||||| || | ||||||| | ||| ||||| || || || || || Sbjct 154731 GACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCGGGT 154672 Query 2019207 CGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCC 2019266 ||||||||| | ||||||||||||| ||||| | | || ||| |||||||| || Sbjct 154671 CGCCACAAGCTCGTCATCCTCGATGAAGCCGATTCGATGACCCCGGGAGCCCAGCAAGCG 154612 Query 2019267 CTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACG 2019326 ||||| ||| ||||||| | | ||| ||| || || || || | || |||||| | Sbjct 154611 CTCCGCAGGACGATGGAAATATTCTCCAGCACCACTCGCTTCGCCTTTGCGTGCAACCAG 154552 Query 2019327 TCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTC 2019386 | | ||||||| | | ||||| || |||||||||||| | | || | || Sbjct 154551 AGCAACAAGATCATCGAGCCGATTCAGAGTCGATGCGCCATCTTGAGGTACTCGAGGCTG 154492 Query 2019387 ACCGACGCCCAG 2019398 ||||| ||| || Sbjct 154491 ACCGATGCCGAG 154480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915695167024898