Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900008665.1_202016-07-08] 5,182 sequences; 26,789,479 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq75 179 9e-40 seq42 168 2e-36 seq158 165 2e-35 seq428 149 1e-30 seq9 149 1e-30 >seq75 Length=81244 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| ||||| || || || | ||||| Sbjct 7494 AGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCC 7435 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || ||||||||||| || |||| || ||||| ||| Sbjct 7434 TCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTATCC 7375 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| ||| || |||||||| ||||||||| Sbjct 7374 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 7315 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 7314 TTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 7283 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| |||||||| || || | ||||| Sbjct 7722 AGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTACGGCCATCC 7663 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || || ||||| || |||| |||||||||||| Sbjct 7662 TCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 7603 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| ||||| || || |||||||| ||||||||| Sbjct 7602 TGAATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTC 7543 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 7542 TTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 7511 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || ||||| || ||||| || || || | ||||| Sbjct 7266 AGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCC 7207 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || || ||||| || |||| |||||||||||| Sbjct 7206 TCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 7147 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || |||||||| ||||||||| Sbjct 7146 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTC 7087 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 7086 TTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 7055 >seq42 Length=107705 Score = 168 bits (186), Expect = 2e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| ||||||||||| || || || | ||| | ||||| Sbjct 55375 AGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCC 55316 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || ||||| ||||| || || | ||||||||||| Sbjct 55315 TCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCT 55256 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || |||||||| ||||||||| Sbjct 55255 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTC 55196 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| |||||||| ||||| Sbjct 55195 TTGCCCGTAAGAGTCTTGACAAA 55173 >seq158 Length=48607 Score = 165 bits (182), Expect = 2e-35 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| ||||||||||| || || || | ||| | ||||| Sbjct 44750 AGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCC 44691 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || ||||| ||||| || || | ||||||||||| Sbjct 44690 TCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCT 44631 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || |||||||| ||||| ||| Sbjct 44630 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTC 44571 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 || |||||||| ||||| ||||| | |||| Sbjct 44570 TTGCCCGTGAGGGTCTTGACAAAGATTTGCA 44540 >seq428 Length=13982 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || ||||| || ||||| || || || | ||||| Sbjct 13517 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCC 13576 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| | || || ||||| ||||||| || |||||||| Sbjct 13577 TCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 13636 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| ||| || |||||||| ||||||||| Sbjct 13637 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 13696 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | ||||| Sbjct 13697 TTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 13728 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || ||||| || ||||| || || || | ||||| Sbjct 13745 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCC 13804 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || || ||||| ||||||| || ||||||||| Sbjct 13805 TCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 13864 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| || || || || |||||||| ||||||||| Sbjct 13865 TGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGACCTCGAGCGTGATCGTC 13924 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | ||||| Sbjct 13925 TTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 13956 >seq9 Length=159304 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || ||||| || ||||| || || || | ||||| Sbjct 138 AGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCC 197 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| | || || ||||| ||||||| || |||||||| Sbjct 198 TCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 257 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| ||| || |||||||| ||||||||| Sbjct 258 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 317 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | ||||| Sbjct 318 TTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159075038827430